RetrogeneDB ID: retro_ggor_1610

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 22:10686156..10686501(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000012894
• Aliases: None
• Description: None

Sequence

>retro_ggor_1610
TCCTCCAGCCCCGAGGCCGGCGACGGGCAGATCCGCCTCACGGACAGCTGCGTCCAGAGGCTTCTGGAAATCACCAAAGG
ATCAGAATTCCTCAGGCTGCAGGTGGAGGGAGGTAGATGCTCCGGATTCCAGTACAGACGTTCACTGGGTACAGTTATCA
ACCCCGACGACAGTGTATTTGAACAGGGTGGGGCAAGAGTGGTGGTTGACTCTGATAGCTTAGCCTTCGCGAAAGGGGCC
TAGGTGGACTTCAGCCAAGAACTGATCCGAAGCTCATTTCAAGTGTCAAACAATCCTCAAGCACAGCAAGGCTGCTCCTG
TGGGTCATCCTTCTCTGTCAAACTT

Alignment

ORF - retro_ggor_1610 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.43 %
• Parental protein coverage: 75.16 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SSSPEAGEGQIRLTDSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVD
          SSSPEAG.GQIRLTDSCVQRLLEIT.GSEFLRLQVEGG.CSGFQY..SL.TVINPDD.VFEQGGARVVVD
Retrocopy SSSPEAGDGQIRLTDSCVQRLLEITKGSEFLRLQVEGGRCSGFQYRRSLGTVINPDDSVFEQGGARVVVD

Parental  SDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL
          SDSLAF.KGA.VDFSQELIRSSFQV.NNPQAQQGCSCGSSFS.KL
Retrocopy SDSLAFAKGA*VDFSQELIRSSFQVSNNPQAQQGCSCGSSFSVKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1610 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1610 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pan troglodytes	retro_ptro_1504
Macaca mulatta	retro_mmul_643

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020479	1 retrocopy	retro_cjac_1450,
Dipodomys ordii	ENSDORG00000014857	1 retrocopy	retro_dord_762,
Gorilla gorilla	ENSGGOG00000012894	1 retrocopy	retro_ggor_1610 ,
Macaca mulatta	ENSMMUG00000006566	1 retrocopy	retro_mmul_643,
Nomascus leucogenys	ENSNLEG00000016268	1 retrocopy	retro_nleu_2754,
Ochotona princeps	ENSOPRG00000011684	2 retrocopies	retro_opri_1068, retro_opri_124,
Pan troglodytes	ENSPTRG00000006536	1 retrocopy	retro_ptro_1504,
Rattus norvegicus	ENSRNOG00000012085	1 retrocopy	retro_rnor_1009,