RetrogeneDB ID: | retro_ptro_1504 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 22:25309037..25309487(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ISCA2 | ||
Ensembl ID: | ENSPTRG00000006536 | ||
Aliases: | None | ||
Description: | iron-sulfur cluster assembly 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19857] |
Percent Identity: | 85.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAWGSSLTAATQRAVTPWPRGRLLAASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGSEFL |
M.AA.G.SL.AATQ..VTPWPRGRLLAASLG....R..SSS.PEAG.GQIRLTDSCVQRLLEIT.GSEFL | |
Retrocopy | MVAAQGLSLRAATQTSVTPWPRGRLLAASLG---LRGVSSS-PEAGDGQIRLTDSCVQRLLEITKGSEFL |
Parental | RLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQA |
RLQVEGG.CSGFQY..SLDTVINPD.RVFEQGGARVVVDSDSLA..KGAQVDFSQELIRSSFQV.NNPQA | |
Retrocopy | RLQVEGGRCSGFQYRCSLDTVINPDHRVFEQGGARVVVDSDSLAVAKGAQVDFSQELIRSSFQVSNNPQA |
Parental | QQGCSCGSSFSIKL |
QQGCSCGSSFS.KL | |
Retrocopy | QQGCSCGSSFSVKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 7 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .68 RPM |
SRP007412_heart | 0 .00 RPM | 8 .39 RPM |
SRP007412_kidney | 0 .03 RPM | 18 .15 RPM |
SRP007412_liver | 0 .00 RPM | 10 .08 RPM |
SRP007412_testis | 0 .00 RPM | 7 .27 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1610 |
Macaca mulatta | retro_mmul_643 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020479 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014857 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012894 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016268 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011684 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006536 | 1 retrocopy |
retro_ptro_1504 ,
|
Rattus norvegicus | ENSRNOG00000012085 | 1 retrocopy |