RetrogeneDB ID: | retro_ggor_1691 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:66737474..66738091(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027215 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB12 | ||
Ensembl ID: | ENSGGOG00000000683 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.2 % |
Parental protein coverage: | 50.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KQYDQFGDDKSQAARHG-HGHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRR |
KQYD..GD..SQA.R.G.H.HGDFH.GFEADISPEDLFNMFFG.GFPSS.V.VYSNG.MRYTYQQRQ.RR | |
Retrocopy | KQYDHLGDNRSQAVRSG<HRHGDFHHGFEADISPEDLFNMFFGNGFPSSKVYVYSNGCMRYTYQQRQGRR |
Parental | DNQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSVGHI-HRRVTDHLGVVYYVGDTFSEEY |
....DG..GVFVQLMPILIL...SALSQLMVSSPPYSLSPR..VGHI.HRRVTDHL.V.YYV..TFSEEY | |
Retrocopy | EKRSDGSWGVFVQLMPILIL--TSALSQLMVSSPPYSLSPRLFVGHI<HRRVTDHLSVIYYVAGTFSEEY |
Parental | TGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHKAQKMGT-PSCSRLSEVQASLH |
TGSSL.TV..NV.DDYIANL.NNCW.EKQQ..GLLYR.RYFGDTD.YHKAQKMG..P.CS.LS..QASLH | |
Retrocopy | TGSSLQTVKPNVKDDYIANLWNNCWTEKQQTKGLLYRGRYFGDTDTYHKAQKMGS>PCCSQLSQDQASLH |
Parental | G |
G | |
Retrocopy | G |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 25 .08 RPM |
SRP007412_cerebellum | 0 .16 RPM | 34 .51 RPM |
SRP007412_heart | 0 .06 RPM | 13 .48 RPM |
SRP007412_kidney | 0 .12 RPM | 35 .74 RPM |
SRP007412_liver | 0 .26 RPM | 21 .84 RPM |
SRP007412_testis | 0 .00 RPM | 55 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2273 |
Pan troglodytes | retro_ptro_1608 |
Pongo abelii | retro_pabe_1945 |
Callithrix jacchus | retro_cjac_1200 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007303 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009977 | 1 retrocopy | |
Homo sapiens | ENSG00000148719 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000683 | 1 retrocopy |
retro_ggor_1691 ,
|
Macropus eugenii | ENSMEUG00000002024 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002613 | 1 retrocopy |