RetrogeneDB ID: | retro_meug_1511 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold43078:2529..3364(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB12 | ||
Ensembl ID: | ENSMEUG00000002024 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 12 [Source:HGNC Symbol;Acc:14891] |
Percent Identity: | 66.19 % |
Parental protein coverage: | 73.8 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MESNKDEAERCITIALSAIKSRQPERALRFLEKAQRLYPTPRVRALIESLTQNGQTSHGQTRPKDTATSH |
M.SNKDEAE.CITI....IKS.QPERAL.FLEK.QR.........LIES.T.NG.TSH.Q.R.KD.ATSH | |
Retrocopy | MKSNKDEAEPCITITIRTIKSHQPERALHFLEKSQRF*LMSVMNKLIESVTHNGHTSHIQARSKDIATSH |
Parental | RKTGGGETPSANGEAGGEGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEEDLKKAYRKLALKFHPDK |
..TGGGETPSANGEA.GEG.KGY.QDQMEAVK.VKQ.KDYY.ILG.SREA....LKK...KL.LKFHPD. | |
Retrocopy | *RTGGGETPSANGEARGEGIKGYMQDQMEAVKKVKQFKDYYVILGASREALKDNLKKTHQKLTLKFHPDR |
Parental | NHAPGATEAFKAIGTAYAVLSNTEKRRQYDQFGDEKSQAARQ-GQGHGDFHRGFEADISPEDLFNMFFGG |
NHAPG.T.AFK.IGT.YA.L.N.EKRRQ...F.D.KSQ.A.Q.GQ.HGDFH.GFE..ISP.DLFNMFFGG | |
Retrocopy | NHAPGVTKAFKSIGTIYAMLCNSEKRRQCN*F*DAKSQDAQQ<GQIHGDFHQGFEGGISPGDLFNMFFGG |
Parental | GFPSSNI-HVYSNGRMRYTYHQRPDRRENQGDGGLGLFVQLMPILILI---IVSALSQMMVSSPPYSLSH |
GF.S.NI..VY.NG..RYTY.Q.PD..ENQGDGGL.LFV.L.PILI.I...IVS..S......P.....H | |
Retrocopy | GFLSINI<YVYNNGCIRYTYPQKPDHWENQGDGGLDLFV*LIPILIKIRKMIVSSPSYCLRQRPLLGHVH |
Parental | R |
. | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007303 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009977 | 1 retrocopy | |
Homo sapiens | ENSG00000148719 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000683 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002024 | 2 retrocopies |
retro_meug_1115, retro_meug_1511 ,
|
Pongo abelii | ENSPPYG00000002353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002613 | 1 retrocopy |