RetrogeneDB ID: | retro_meug_1115 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold29564:12499..13333(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB12 | ||
Ensembl ID: | ENSMEUG00000002024 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 12 [Source:HGNC Symbol;Acc:14891] |
Percent Identity: | 88.85 % |
Parental protein coverage: | 74.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESNKDEAERCITIALSAIKSRQPERALRFLEKAQRLYPTPRVRALIESLTQNGQTSHGQTRPKDTATSH |
MESNKDEAERCI.IALSAIKS.QPERALRFLEKAQRLYPTP.V..LIESLTQNGQT.HGQTRPKDTATSH | |
Retrocopy | MESNKDEAERCISIALSAIKSHQPERALRFLEKAQRLYPTPGVHTLIESLTQNGQTFHGQTRPKDTATSH |
Parental | RKTGGGETPSANGEAGGEGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEEDLKKAYRKLALKFHPDK |
RK.GGGET.SANGE...EGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEE.LKKAYRKLALKFHPDK | |
Retrocopy | RKMGGGETLSANGEVRAEGTKGYTQDQMEAVKRVKQCKDYYEILGVSREASEEALKKAYRKLALKFHPDK |
Parental | NHAPGATEAFKAIGTAYAVLSNTEKRRQYDQFGDEKSQAARQGQGHGDFHRGFEADISPEDLFNMFFGGG |
NHAPGATEAFKAIGTAYAVLSN.EK.RQYD.FGDEKSQAA.QGQ.HG.FHRGFEADISPEDLFNMFFGG. | |
Retrocopy | NHAPGATEAFKAIGTAYAVLSNSEKKRQYDKFGDEKSQAAQQGQDHGHFHRGFEADISPEDLFNMFFGGV |
Parental | FPSSNIHVYSNGRMRYTYHQRPDRR-ENQGDGGLGLFVQLMPILILIIVSALSQMMVSSPPYSLSHRP |
FPSSNIHVY.N...RYTYHQRPDRR.ENQGDGGLGL.V.LMPILILI.VSA..QMMVS.PPYSLS.RP | |
Retrocopy | FPSSNIHVYRNDHVRYTYHQRPDRRWENQGDGGLGLSVLLMPILILITVSAFNQMMVSRPPYSLSQRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007303 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009977 | 1 retrocopy | |
Homo sapiens | ENSG00000148719 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000683 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002024 | 2 retrocopies |
retro_meug_1115 , retro_meug_1511,
|
Pongo abelii | ENSPPYG00000002353 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002613 | 1 retrocopy |