RetrogeneDB ID: | retro_ggor_1939 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:43851578..43851921(-) | ||
Located in intron of: | ENSGGOG00000016759 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC58 | ||
Ensembl ID: | ENSGGOG00000001964 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.59 % |
Parental protein coverage: | 79.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAAPSGGVNCEEFAEFQELLKVMRTIDDRIVHELNTTVPTASFA-GKIDASQTCKQLYESLMAAHASRDR |
M.APSGGVNCEEFA.FQELLKVM.T.D.R.VH.LNTTVPTASFA.GK...........ESLMAAHASRDR | |
Retrocopy | MVAPSGGVNCEEFAKFQELLKVMWTVDNRLVH*LNTTVPTASFA>GKLMPAKPVNN-FESLMAAHASRDR |
Parental | VIKNCIAQTSAVVKNLREEREKNLDDLTLLKQLRKEQTKLKWMQSE |
VIKN.IAQTSAVV.NL.EEREKNL.DL.LLKQLR.EQTKLKWM.SE | |
Retrocopy | VIKNYIAQTSAVVENL*EEREKNLEDLILLKQLRTEQTKLKWM*SE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .19 RPM | 0 .82 RPM |
SRP007412_cerebellum | 0 .04 RPM | 0 .98 RPM |
SRP007412_heart | 0 .06 RPM | 0 .66 RPM |
SRP007412_kidney | 0 .37 RPM | 2 .37 RPM |
SRP007412_liver | 0 .74 RPM | 2 .72 RPM |
SRP007412_testis | 0 .21 RPM | 1 .55 RPM |