RetrogeneDB ID: | retro_mmul_1104 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:72017517..72017949(-) | ||
Located in intron of: | ENSMMUG00000014680 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC58 | ||
Ensembl ID: | ENSMMUG00000011919 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAPSGGVNCEEFAEFQELLKVMRTIDDRIVHELNTTVPTASFAGKID-ASQTCKQLYESLMAAHASRDR |
MAAPSGGV..EE.A.F.ELL.VMRT.DDRIVH.LNT.VPTASF.GK...ASQTCKQ...SLMAA.ASR.R | |
Retrocopy | MAAPSGGVDWEEVAQFHELLEVMRTADDRIVHKLNTKVPTASFIGKTM<ASQTCKQI*GSLMAALASRNR |
Parental | VIKNCIAQTSAVVK-NLREEREKNLDDLTLLKQLRKEQTKLKWMQSELNVEEVVNDRSWKVFNERCRIHF |
VIKNC.AQTS.VVK.NLREERE.NLD.LTLLKQ..KEQTKLKWMQSE.NVEEVV.D...KVF..RC.IHF | |
Retrocopy | VIKNCTAQTSEVVK>NLREERENNLDYLTLLKQPGKEQTKLKWMQSEPNVEEVVKDKG*KVFDKRCQIHF |
Parental | KPPKNE |
KPPKNE | |
Retrocopy | KPPKNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 2 .91 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .98 RPM |
SRP007412_cerebellum | 0 .26 RPM | 2 .97 RPM |
SRP007412_heart | 0 .00 RPM | 13 .60 RPM |
SRP007412_kidney | 0 .12 RPM | 8 .69 RPM |
SRP007412_liver | 0 .04 RPM | 2 .89 RPM |
SRP007412_testis | 0 .00 RPM | 2 .26 RPM |