RetrogeneDB ID:

retro_ggor_202

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:4864147..4866055(-)
Located in intron of:ENSGGOG00000002691
Retrocopy
information
Ensembl ID:ENSGGOG00000034892
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:PAPOLA
Ensembl ID:ENSGGOG00000006287
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_202
ATGCCGTTTCCGGTGACAACCCAGGGACCACCGCAGCCGGCGCCGCTGCCGAAGCGCTACGGCGTCTCCTCGCCTATCAG
TCTAGCGGTCCCCAAGGAGACGGACTGCCTCCTCACCCGGAGGCTAATAGAAACCCTCAGGCCCTTCGGGGTCTTCGAAG
AGGAAGAGGAACTGCAGCGCAGGATTTTAGTTTTGGAAAAATTAAATAATCTGGTAAAGGAATGGATACGCGAAATGAGT
GAAAGCAAGAGTCTTCCCCAGTCTGTAACTGAAAACGTTGGAGGAAAGATTTTTACGTTTGGCTCTTACAGATTAGGAGT
ACATACGAAAGGCGCAGATATTGACGCCTTGTGCGTTGCGCCAAGTCATGTGGATCGAAGCGACTTTTTCGCCTCATTCT
ATGCTAAACTGAAACTACAGGAGGAAGTGAAAGACTTAAGGGCTGTTGAGGAGGCATTTGTGCCAGTTATCAAACTGTGT
TTTGATGGGATAGAGATTGATATTTTATTTGCAAGATTAGCACTACAGACTATTCCAGAAGATTTGGACCTAAGAGATGA
CAGTCTACTTAAAAATTTAGACATTAGATGCATAAGAAGCCTTAATGGTTGCCGGGTAACCGATGAAATTTTACATCTAG
TGCCAAACATTGACAACTTCAGGTTGACCCTGAGAGCCATCAAACTGTGGGCCAAGTGCCACAATATCTATTCCAATATA
TTAGGTTTCCTCGGAGGTGTTTCCTGGGCCATGCTAGTAGCAAGAACTTGTCAGCTTTATCCAAATGCAGTAGCGTCAAC
TCTTGTACGGAAATTCTTCTTGGTGTTTTCAGAATGGGAATGGCCAAACCCAGTGTTACTGAAGGAGCCTGAAGAACGGA
ATCTTAATTTGCCTGTCTGGGACCCAAGAGTAAATCCCAGCGATAGGTACCATCTTATGCCTATCATCACACCAGCATAC
CCACAGCAGAACTCCACATACAACGTGTCTATTTCAACCAGGATGGTCATGATTGAGGAGTTTAAACAGGGGCTTGCTAT
CACACACGAGATTTTGCTAAGTAAGGCAGAGTGGTCCAAACTCTTTGAAGCTCCAAGCTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTGGCAAGTGCATCAACAGAAAAACAACATTTAGAATGGGTGGGCTTGGTGGAATCAAAGATCCGAATC
CTGGTTGGGAGCTTGGAGAAGAATGAATTTATTACACTGGCACATGTGAATCCACAGTCATTTCCAGCACCCAAAGAAAA
TCCTGATATGGAAGAATTTCGTACAATGTGGGTGATTGGGTTAGGGCTAAAAAAGCCAGAAAACTCTGAAATTCTCAGCA
TTGATCTCACCTATGATATCCAGTCTTTCACAGATACTGTTTATAGGCAAGCAGTGAATAGTAAGATGTTTGAGATGGGT
ATGAAAATTACTGCAATGCATTTAAGAAGAAAGGAACTTCACCAGCTGCTGCCTCATCATGTGCTTCAGGACAAGAAAGC
ACACTCACCAGAAGGTAGAAGATTGACAGATTTGAATGACAGCAGCTTTGACTTGTCTGCAGGCTGTGAAAACAGCATGT
CTGTGCCTTCATCTACTAGCACTATGAAGACAGGCCCATTGATTAGCAGTTCTCAGGGTAGAAACAGTCCTGCCTTGGCT
GTAATGACAGCATCTGTGGCTGACATACAGGCTACTGAAATGTCCTTGCAACAGGTGAATACCAATGAAAGTTCAGGGGT
TGCATTAAACGAAAGTATTCCTCACGCTGTCTCTCAGCCTGCCATTTCTCCATCACCAAAGGCCATGGTCGCCAGAGTTG
TTTCTTCAACATGTCTCATAAGCCATCCAGACCTTCAGGAAACTCAGCAACAAACATATCTAATCCTA

ORF - retro_ggor_202 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.28 %
Parental protein coverage: 83.89 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKLNN
MPFPVTTQG..Q..P..K.YG..SPISLA.PKETDC.LT..LIETL.PFGVFEEEEELQRRIL.L.KLNN
RetrocopyMPFPVTTQGPPQPAPLPKRYGVSSPISLAVPKETDCLLTRRLIETLRPFGVFEEEEELQRRILVLEKLNN
ParentalLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ
LVKEWIRE.SESK.LPQSV.ENVGGKIFTFGSYRLGVHTKGADIDALCVAP.HVDRSDFF.SFY.KLKLQ
RetrocopyLVKEWIREMSESKSLPQSVTENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRSDFFASFYAKLKLQ
ParentalEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
RetrocopyEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
ParentalLHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
LHLVPNIDNFRLTLRAIKLWAK.HNIYSNILGFLGGVSWAMLVARTCQLYPNA.ASTLV.KFFLVFS.WE
RetrocopyLHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWE
ParentalWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE
WPNPVLLK.PEE.NLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVS.STRMVM.EEFKQGLAIT.E
RetrocopyWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHE
ParentalILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
ILLSKAEWSKLFEAP.FFQKYKHYIVLLASA.TEKQ.LEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
RetrocopyILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
ParentalFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKR
FPAPKENPD.EEFRTMWVIGL..KK.ENSE.LS.DLTYDIQSFTDTVYRQA.NSKMFE..MKI.AMH..R
RetrocopyFPAPKENPDMEEFRTMWVIGLGLKKPENSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLRR
ParentalKQLHQLLPNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRNSPA
K.LHQLLP.HVLQ.KK.HS.EG..LT.LNDSS.DLS....NSMSVPS.TS..KT.PL.S..SSQGRNSPA
RetrocopyKELHQLLPHHVLQDKKAHSPEGRRLTDLNDSSFDLSAGCENSMSVPSSTSTMKTGPLIS--SSQGRNSPA
ParentalPAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPP
.AV..ASV..IQATE.S..QVN..ESSG....ESIP....QPAISP.PK..V.RVVSST.L...P
RetrocopyLAVMTASVADIQATEMSLQQVNTNESSGVALNESIPHAVSQPAISPSPKAMVARVVSSTCLISHP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 37 .07 RPM
SRP007412_cerebellum 0 .16 RPM 45 .62 RPM
SRP007412_heart 0 .09 RPM 20 .17 RPM
SRP007412_kidney 0 .00 RPM 70 .04 RPM
SRP007412_liver 0 .00 RPM 62 .73 RPM
SRP007412_testis 96 .87 RPM 212 .79 RPM

ChIP-Seq - click to see more details

Gorilla gorilla was not studied using ChIP-Seq data.

EST - click to see more details

Gorilla gorilla was not studied using EST data.

TSS - click to see more details

Gorilla gorilla was not studied using FANTOM5 data.

Lab - click to see more details

retro_ggor_202 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_202 has 9 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_30
Pan troglodytes retro_ptro_2595
Pongo abelii retro_pabe_3113
Macaca mulatta retro_mmul_1675
Callithrix jacchus retro_cjac_1763
Mus musculus retro_mmus_37
Rattus norvegicus retro_rnor_863
Bos taurus retro_btau_1078
Canis familiaris retro_cfam_1783
Parental genes homology:
Parental genes homology involve 20 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000141421 retrocopy
retro_amel_517,
Bos taurus ENSBTAG000000040541 retrocopy
retro_btau_1078,
Canis familiaris ENSCAFG000000177831 retrocopy
retro_cfam_1783,
Callithrix jacchus ENSCJAG000000065122 retrocopies
retro_cjac_1763, retro_cjac_543,
Homo sapiens ENSG000000900601 retrocopy
retro_hsap_30,
Gorilla gorilla ENSGGOG00000006287 1 retrocopy
retro_ggor_202 ,
Loxodonta africana ENSLAFG000000009461 retrocopy
retro_lafr_895,
Myotis lucifugus ENSMLUG000000109221 retrocopy
retro_mluc_1396,
Macaca mulatta ENSMMUG000000186101 retrocopy
retro_mmul_1675,
Monodelphis domestica ENSMODG000000128872 retrocopies
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furoENSMPUG000000030541 retrocopy
retro_mputfur_1375,
Mus musculus ENSMUSG000000211111 retrocopy
retro_mmus_37,
Nomascus leucogenys ENSNLEG000000006251 retrocopy
retro_nleu_2771,
Otolemur garnettii ENSOGAG000000046111 retrocopy
retro_ogar_987,
Procavia capensis ENSPCAG000000041991 retrocopy
retro_pcap_91,
Pongo abelii ENSPPYG000000061281 retrocopy
retro_pabe_3113,
Pan troglodytes ENSPTRG000000067041 retrocopy
retro_ptro_2595,
Pteropus vampyrus ENSPVAG000000139251 retrocopy
retro_pvam_360,
Rattus norvegicus ENSRNOG000000048271 retrocopy
retro_rnor_863,
Vicugna pacos ENSVPAG000000064641 retrocopy
retro_vpac_378,


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