RetrogeneDB ID: | retro_ggor_2537 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:103090177..103090633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027713 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF181 | ||
Ensembl ID: | ENSGGOG00000004953 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASYFDEHDCEPSDPE-QETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRG |
MASY.DEHDCEP.DP..QETRTNM.LEL.RSLFNRMDFEDLGLVVDWDHHLPPPAAK.VVE.LPR.VIRG | |
Retrocopy | MASYIDEHDCEPLDPQ>QETRTNMVLELVRSLFNRMDFEDLGLVVDWDHHLPPPAAKIVVEKLPRAVIRG |
Parental | SQAELKCPVCLLEFEEEETAIEM-PCHHLFHSSCILPWLSKTNSCPLCRHELPTDDDTYEEHRRDKARKQ |
SQAELKCP..LLE..EEETAIEM...HHLFHSSCILPWLSKTNSCPLCRHELPTDD.TYEEHRRDKARKQ | |
Retrocopy | SQAELKCPAYLLE-SEEETAIEM<ASHHLFHSSCILPWLSKTNSCPLCRHELPTDDYTYEEHRRDKARKQ |
Parental | QQQHRLENLHGAMYT |
QQQ.RLENLHGAMYT | |
Retrocopy | QQQNRLENLHGAMYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .13 RPM |
SRP007412_cerebellum | 0 .04 RPM | 18 .83 RPM |
SRP007412_heart | 0 .00 RPM | 12 .95 RPM |
SRP007412_kidney | 0 .12 RPM | 60 .72 RPM |
SRP007412_liver | 0 .03 RPM | 35 .74 RPM |
SRP007412_testis | 0 .00 RPM | 63 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3771 |
Pan troglodytes | retro_ptro_2557 |
Pongo abelii | retro_pabe_3083 |
Macaca mulatta | retro_mmul_1637 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019647 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000004953 | 3 retrocopies |
retro_ggor_2537 , retro_ggor_759, retro_ggor_799,
|
Pongo abelii | ENSPPYG00000012225 | 2 retrocopies |