RetrogeneDB ID:

retro_ggor_2537

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:103090177..103090633(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000027713
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF181
Ensembl ID:ENSGGOG00000004953
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2537
ATGGCGTCCTATATCGATGAACACGACTGTGAGCCGTTGGACCCTCAAGCAGGAGACTCGAACCAACATGGTGCTGGAGC
TGGTAAGGTCACTTTTCAATAGGATGGACTTTGAAGACTTGGGGTTGGTAGTAGATTGGGACCACCACCTGCCTCCACCA
GCTGCCAAGATTGTGGTTGAGAAACTCCCCAGGGCAGTCATCAGAGGCTCTCAGGCTGAGCTCAAGTGCCCCGCGTATCT
TTTGGAATCTGAGGAGGAGACTGCCATTGAGATGCTTCCCATCACCTTTTCCATTCCAGCTGCATTCTGCCCTGGCTAAG
CAAGACAAATTCCTGTCCCTTGTGCCGCCATGAGCTGCCCACTGATGACTACACTTATGAGGAGCACAGACGAGATAAGG
CTCGAAAACAGCAGCAGCAGAACCGACTGGAGAACCTCCATGGAGCCATGTACACG

ORF - retro_ggor_2537 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.39 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMASYFDEHDCEPSDPE-QETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRG
MASY.DEHDCEP.DP..QETRTNM.LEL.RSLFNRMDFEDLGLVVDWDHHLPPPAAK.VVE.LPR.VIRG
RetrocopyMASYIDEHDCEPLDPQ>QETRTNMVLELVRSLFNRMDFEDLGLVVDWDHHLPPPAAKIVVEKLPRAVIRG
ParentalSQAELKCPVCLLEFEEEETAIEM-PCHHLFHSSCILPWLSKTNSCPLCRHELPTDDDTYEEHRRDKARKQ
SQAELKCP..LLE..EEETAIEM...HHLFHSSCILPWLSKTNSCPLCRHELPTDD.TYEEHRRDKARKQ
RetrocopySQAELKCPAYLLE-SEEETAIEM<ASHHLFHSSCILPWLSKTNSCPLCRHELPTDDYTYEEHRRDKARKQ
ParentalQQQHRLENLHGAMYT
QQQ.RLENLHGAMYT
RetrocopyQQQNRLENLHGAMYT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 25 .13 RPM
SRP007412_cerebellum 0 .04 RPM 18 .83 RPM
SRP007412_heart 0 .00 RPM 12 .95 RPM
SRP007412_kidney 0 .12 RPM 60 .72 RPM
SRP007412_liver 0 .03 RPM 35 .74 RPM
SRP007412_testis 0 .00 RPM 63 .30 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2537 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2537 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3771
Pan troglodytes retro_ptro_2557
Pongo abelii retro_pabe_3083
Macaca mulatta retro_mmul_1637

Parental genes homology:
Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000196473 retrocopies
Gorilla gorilla ENSGGOG00000004953 3 retrocopies
retro_ggor_2537 , retro_ggor_759, retro_ggor_799,
Pongo abelii ENSPPYG000000122252 retrocopies



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