RetrogeneDB ID: retro_ggor_799

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:52680109..52680367(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF181
• Ensembl ID: ENSGGOG00000004953
• Aliases: None
• Description: None

Sequence

>retro_ggor_799
ATTAGCCATGGGATTCCTGCACAGCTCAAGTGCCCCATGTGTCTTTTGAGCCTTGAGGAGGAGACTGACATGGAGATGCC
TTGCCATCCCCTCTTCCAACGCAACTGAACCTTCCCTGGCTAAGCAAGACAAATTCCTCCCGCTATGCTGCCGTGAGCTG
CTCACTGATAATGACATGTAGGAGGAGCACAGATGACATGAGGCCCAGAAGCAGCAGCAGAAGTGTGGCTGGAGAACGTG
CATGGAGCCAGGTACACC

Alignment

ORF - retro_ggor_799 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.34 %
• Parental protein coverage: 57.52 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  VIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFH-SSCILPWLSKTNS-CPLCRHELPTDDDTYEEHRRD
          ...G..A.LKCP.CLL..EEE.T..EMPCH.LF......LPWLSKTNS..PLC..EL.TD.D..EEHR..
Retrocopy ISHGIPAQLKCPMCLLSLEEE-TDMEMPCHPLFQ<TQLNLPWLSKTNS<LPLCCRELLTDNDM*EEHR*H

Parental  KARKQQQ-QHRLENLHGAMYT
          .A.KQQQ....LEN.HGA.YT
Retrocopy EAQKQQQ<EVWLENVHGARYT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	25.13 RPM
SRP007412_cerebellum	0.00 RPM	18.83 RPM
SRP007412_heart	0.00 RPM	12.95 RPM
SRP007412_kidney	0.00 RPM	60.72 RPM
SRP007412_liver	0.00 RPM	35.74 RPM
SRP007412_testis	0.00 RPM	63.30 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_799 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_799 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019647	3 retrocopies	retro_cjac_2423, retro_cjac_355, retro_cjac_3849,
Gorilla gorilla	ENSGGOG00000004953	3 retrocopies	retro_ggor_2537, retro_ggor_759, retro_ggor_799 ,
Pongo abelii	ENSPPYG00000012225	2 retrocopies	retro_pabe_3083, retro_pabe_807,