RetrogeneDB ID: | retro_ggor_269 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:99045872..99046444(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000085365 | ||
Ensembl ID: | ENSGGOG00000015191 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.42 % |
Parental protein coverage: | 56.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PPPGSVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAEL-DRREREMQNLSQH |
PPPGSV.MPNVPNTQPAIMKPTE.HP.YT.IAK.HALAQAELLK.QEE.ERK.AEL...RE.EMQNL.QH | |
Retrocopy | PPPGSVRMPNVPNTQPAIMKPTEKHPVYTPIAKKHALAQAELLKHQEEVERKDAEL<SHRE*EMQNLTQH |
Parental | GRKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSARAVDF |
GRKNNWP.L.SNFP..PCFYQDFSVDIP.EFQKTVKL.YYLWMFHAVTLFLNIF.CL.WFCVD.AR.VDF | |
Retrocopy | GRKNNWPLLLSNFPIEPCFYQDFSVDIPIEFQKTVKLIYYLWMFHAVTLFLNIFRCLSWFCVDFARVVDF |
Parental | GLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQA |
.LSILWFLLFTPCSFVCWYRPLYGAFRSDSSFR.FVFFFVYIC.FAVH..QA | |
Retrocopy | SLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRLFVFFFVYIC*FAVHAFQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 61 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .43 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .50 RPM |
SRP007412_liver | 0 .00 RPM | 14 .27 RPM |
SRP007412_testis | 0 .00 RPM | 30 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_189 |
Macaca mulatta | retro_mmul_396 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032395 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008868 | 1 retrocopy | |
Homo sapiens | ENSG00000085365 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015191 | 1 retrocopy |
retro_ggor_269 ,
|
Macaca mulatta | ENSMMUG00000016398 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019731 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012775 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014113 | 1 retrocopy |