RetrogeneDB ID: | retro_mmul_396 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:99447291..99447893(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCAMP1 | ||
Ensembl ID: | ENSMMUG00000016398 | ||
Aliases: | None | ||
Description: | secretory carrier membrane protein 1 [Source:HGNC Symbol;Acc:10563] |
Percent Identity: | 83.17 % |
Parental protein coverage: | 62.81 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | LAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSV-DIPVEFQKTVK |
LAQAELLK.QEE.ERK.A....RE.EMQNL.QHGRKNNWP.L.SNFP..PCFYQDFSV.DIP.EFQKTVK | |
Retrocopy | LAQAELLKHQEEVERKDA*FNHRE*EMQNLTQHGRKNNWPLLLSNFPIEPCFYQDFSV<DIPIEFQKTVK |
Parental | LMYYLWMFHAVTLFLNIFGCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFV |
L.YY.WMFHAVTLF.NIF.CL.WFCVD..R.VDFGLSI.WFLLFTPCSFVCWYRPLYGAFRSDSSFRFFV | |
Retrocopy | LIYYFWMFHAVTLFPNIFRCLSWFCVDFIRVVDFGLSIPWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFV |
Parental | FFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMF |
FFFVYIC.FAVH..QA.GFHNWGNCG.IS.LTGLNQ.IPVGI.MIIIAALF.ASA.ISLVMF | |
Retrocopy | FFFVYIC*FAVHAFQAVGFHNWGNCG*ISTLTGLNQTIPVGIRMIIIAALFAASAAISLVMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .28 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 29 .70 RPM |
SRP007412_heart | 0 .00 RPM | 4 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .04 RPM |
SRP007412_liver | 0 .00 RPM | 1 .82 RPM |
SRP007412_testis | 0 .00 RPM | 16 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_189 |
Gorilla gorilla | retro_ggor_269 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032395 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008868 | 1 retrocopy | |
Homo sapiens | ENSG00000085365 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015191 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016398 | 1 retrocopy |
retro_mmul_396 ,
|
Monodelphis domestica | ENSMODG00000019731 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012775 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014113 | 1 retrocopy |