RetrogeneDB ID: | retro_ggor_2883 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:110808196..110808570(-) | ||
Located in intron of: | ENSGGOG00000012871 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DENR | ||
Ensembl ID: | ENSGGOG00000005562 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.44 % |
Parental protein coverage: | 63.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SPKQEAGISEGQGTAGEEEEKKKQKRDKGGRGQIKQKK-KTVPQKVTIAK-IPRAKKKYVTRVCGL-ATF |
SPKQEAGI.EGQGTAG.EEE.K.QKR..G.RGQIKQ.K.K..P.KVT..K.IPR..KK.VT..CGL..TF | |
Retrocopy | SPKQEAGINEGQGTAGAEEENKIQKR--GERGQIKQRK>KAIPEKVTQPK<IPRTEKKHVT*MCGL<LTF |
Parental | EIEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK |
EI..DLK.AQRFFAQK..C.ASVT.E.EIIIQ.DFTDD.IDVIQE.WPEV.DDSIEDLGEVKK | |
Retrocopy | EI--DLKKAQRFFAQKL-CSASVTEEEEIIIQEDFTDDVIDVIQENWPEVNDDSIEDLGEVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .84 RPM |
SRP007412_heart | 0 .00 RPM | 2 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .59 RPM |
SRP007412_liver | 0 .00 RPM | 4 .93 RPM |
SRP007412_testis | 0 .00 RPM | 12 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4313 |
Pan troglodytes | retro_ptro_2921 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000016012 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032433 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020488 | 4 retrocopies | |
Homo sapiens | ENSG00000139726 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000005562 | 3 retrocopies |
retro_ggor_2156, retro_ggor_2883 , retro_ggor_813,
|
Nomascus leucogenys | ENSNLEG00000002186 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008150 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015974 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000005073 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005584 | 4 retrocopies |