RetrogeneDB ID: | retro_acar_71 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:192167771..192168089(-) | ||
Located in intron of: | ENSACAG00000011354 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DENR | ||
Ensembl ID: | ENSACAG00000016012 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.7 % |
Parental protein coverage: | 54.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKK-YVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGE |
.KKQK.GGRGQIK.KKKTVPQK.TIAKIP......YVTRV..LAT...DLKEAQRFFAQK.SCG..VTGE | |
Retrocopy | EKKQKKGGRGQIK-KKKTVPQKETIAKIPKPRRNTYVTRVSSLATYKTDLKEAQRFFAQKYSCGTLVTGE |
Parental | DEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK |
DEIIIQ.D.TD.IIDVIQ.K.PEVDD.SI.DLGE.KK | |
Retrocopy | DEIIIQRDSTDNIIDVIQKK*PEVDDNSIKDLGEIKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 87 .86 RPM |
SRP009831_brain | 0 .00 RPM | 93 .69 RPM |
SRP009831_dewlap | 0 .00 RPM | 91 .12 RPM |
SRP009831_embryo | 0 .03 RPM | 103 .20 RPM |
SRP009831_heart | 0 .05 RPM | 64 .07 RPM |
SRP009831_liver | 0 .08 RPM | 40 .29 RPM |
SRP009831_lung | 0 .00 RPM | 36 .22 RPM |
SRP009831_ovary | 0 .00 RPM | 87 .91 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 37 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000016012 | 1 retrocopy |
retro_acar_71 ,
|
Bos taurus | ENSBTAG00000032433 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020488 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000013029 | 1 retrocopy | |
Homo sapiens | ENSG00000139726 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000005562 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002088 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002186 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008150 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015974 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000005073 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005584 | 4 retrocopies | |
Sorex araneus | ENSSARG00000004446 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000009788 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015856 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011472 | 1 retrocopy |