Parental gene: | DENR, ENSCJAG00000020488 |
| Aliases: | None |
| Description: | density-regulated protein [Source:HGNC Symbol;Acc:2769] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:113657006..113670167(+) |
>ENSCJAG00000020488
ATGGCTGCTGACATTTCTGAATCCAGCGGGGCTGATTGCAAAGGAGACCCAAGGAACAGTGCCAAGTTAGATGCCGATTA
CCCACTTCGAGTCCTTTATTGTGGAGTCTGTTCATTACCAACAGAGTACTGTGAATATATGCCTGATGTTGCTAAATGTA
GACAATGGTTAGAGAAGAACTTTCCAAATGAATTTGCAAAACTTACTGTAGCTAGAAAATATACACCCAAACAAGAAACT
GGAATTAGTGAGGGTCAAGGAACAGCAGGGGGTTCCCAAAGGAAAAAGAAACTCAATAAAGGTGGAAGGGGTCAAATAAA
ACAAAAAAAGAAGACTGTACCACAAAAAGTTACTATAGCCAAAATTCCCAGAGCAAAAAAGAAATATGTGACAAGAGTGT
GTGGCCTTGCAACTTTTGAAATAGAAATTGATCTTAAAGAAGCACAAAGATTTTTTGCTCAGAAATTCTCCTGTGGTGCC
TCAGTAACAGGGGAGGATGAAATTATCATTCAGGGAGACTTTACAGATGACATAATTGATGTCATTCAGGAAAAATGGCC
AGAGGTAGATGATGACAGCATCGAAGATCTTGGAGAAGTGAAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 4 .28 RPM |
| SRP051959_heart | 3 .51 RPM |
| SRP051959_kidney | 4 .93 RPM |
| SRP051959_liver | 5 .94 RPM |
| SRP051959_lung | 3 .24 RPM |
| SRP051959_lymph_node | 5 .23 RPM |
| SRP051959_skeletal_muscle | 3 .78 RPM |
| SRP051959_spleen | 5 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000016012 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000032433 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000013029 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000139726 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005562 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002088 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002186 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008150 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015974 | ortholog_one2many | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000005073 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000005584 | ortholog_one2one | 4 retrogenes | |
| Sorex araneus | ENSSARG00000004446 | possible_ortholog | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000009788 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015856 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000011472 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1665 | 88.50 | 98.51 | Please wait, loading  |
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| 2. | retro_cjac_2303 | 75.86 | 99.50 | Please wait, loading |
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| 3. | retro_cjac_2377 | 85.92 | 100.00 | Please wait, loading |
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| 4. | retro_cjac_2627 | 64.79 | 69.31 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000020488 retrocopies