RetrogeneDB ID: | retro_ggor_471 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:200626941..200628069(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000023958 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | XRCC6 | ||
Ensembl ID: | ENSGGOG00000015885 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.74 % |
Parental protein coverage: | 61.24 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | EESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTF |
EES.KLEDLLR.V.AKE.....LSRLKLKLNKDIV.SVGIYNL.QKALKPPPIK.YRE..E.VKTKT..F | |
Retrocopy | EESRKLEDLLRQV*AKEIS**TLSRLKLKLNKDIVLSVGIYNLIQKALKPPPIKPYREIDESVKTKTWIF |
Parental | NTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLM-GFKPLVLLKKHHYLRPSLFVYPEE |
N..TG..LLP.DTKRSQ.YG.RQIILEKEETEELK.FD.PGL.LM.GFKPLV.LKKH.YLRPSLFVY.EE | |
Retrocopy | NVNTGSWLLPRDTKRSQTYGRRQIILEKEETEELKQFDKPGLILM<GFKPLVKLKKHRYLRPSLFVYSEE |
Parental | SLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADD |
SL...SSTLFSALLIKCLEKEV.ALCRYTP.RNIPPYFVALVPQEEELDDQKIQV.P.GFQLVFL..AD. | |
Retrocopy | SLMS*SSTLFSALLIKCLEKEVTALCRYTPCRNIPPYFVALVPQEEELDDQKIQVPPAGFQLVFLCYADN |
Parental | K-RKMPFTEKIMATPEQVGKMKAIVDKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKV |
K.R..PF..K..ATPEQ..K.KAIV.KLRF.YRSDSFEN.VLQQ..RNLEALALDLMEPEQAVDLTLP.V | |
Retrocopy | K<REVPFAKKVTATPEQGDKVKAIVQKLRFKYRSDSFENSVLQQRSRNLEALALDLMEPEQAVDLTLPEV |
Parental | EAMNKRLGS-LVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPM |
EAMNKRLGS.LVD.FKEL.YPPDYNPEGKV...KH.NEG..SKRPKVEYSEEELKTHIS...LGKF.VPM | |
Retrocopy | EAMNKRLGSPLVDKFKELLYPPDYNPEGKVSNIKHNNEGFRSKRPKVEYSEEELKTHISNSMLGKFAVPM |
Parental | LKEAC-RAYGLKSGLKKQELLEALTKHFQD |
LKE.C...YGLKS.LKKQE.LEALT.HFQ. | |
Retrocopy | LKETC<LGYGLKSRLKKQEPLEALTNHFQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 146 .74 RPM |
SRP007412_cerebellum | 0 .00 RPM | 119 .38 RPM |
SRP007412_heart | 0 .03 RPM | 45 .69 RPM |
SRP007412_kidney | 0 .00 RPM | 146 .75 RPM |
SRP007412_liver | 0 .00 RPM | 85 .49 RPM |
SRP007412_testis | 0 .10 RPM | 536 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_511 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000196419 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000015885 | 2 retrocopies |
retro_ggor_3067, retro_ggor_471 ,
|
Macaca mulatta | ENSMMUG00000001856 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015610 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011876 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011736 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000006749 | 1 retrocopy |