RetrogeneDB ID: | retro_hsap_1168 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:19300841..19301582(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000204718 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN2 | ||
Ensembl ID: | ENSG00000064666 | ||
Aliases: | None | ||
Description: | calponin 2 [Source:HGNC Symbol;Acc:2156] |
Percent Identity: | 78.49 % |
Parental protein coverage: | 78.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MSSTQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG---PDFQKGLKDGTILCTLMNKL |
.SSTQFNKGPSY.L.A.V.NRLLS.YD.QKE.ELR.WI.GLTGLSIG...PDFQKGLKDG.ILCTLMNKL | |
Retrocopy | VSSTQFNKGPSYRLLADVQNRLLSIYDSQKEVELRSWI*GLTGLSIGPVSPDFQKGLKDGIILCTLMNKL |
Parental | QPGSVPKINRS-MQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGL |
QPGSVPKINR...QNW.QLE.LSN..K.MVSY.MNPVDLFE.NDLF.SGN..QVQVSLLALAGKAKTKGL | |
Retrocopy | QPGSVPKINRF<QQNWYQLETLSNLLKSMVSYSMNPVDLFETNDLF*SGNVRQVQVSLLALAGKAKTKGL |
Parental | QSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQ-MGTNKCASQSGMTA-YGTRRHLYDPKNHILPPMDHS |
QS.VDI...YSEKQE.NFDDATMKAGQCVIGLQ...TN..ASQ........TRRHLYDPKN.ILPPMDHS | |
Retrocopy | QSEVDIREEYSEKQEGNFDDATMKAGQCVIGLQ>LPTNAPASQARLCT>QSTRRHLYDPKNNILPPMDHS |
Parental | TISLQMGTNKCASQVGMTAPGTRRHIYDTKL-GTDKCDNSS |
TISLQMGT.KCASQVGM.AP.TR.HIYDTKL.G..K.DNSS | |
Retrocopy | TISLQMGTSKCASQVGMAAPRTRWHIYDTKL<GNHKYDNSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 112 .57 RPM |
bodymap2_adrenal | 0 .00 RPM | 74 .98 RPM |
bodymap2_brain | 0 .00 RPM | 7 .85 RPM |
bodymap2_breast | 0 .00 RPM | 71 .30 RPM |
bodymap2_colon | 0 .02 RPM | 53 .46 RPM |
bodymap2_heart | 0 .00 RPM | 21 .03 RPM |
bodymap2_kidney | 0 .00 RPM | 45 .66 RPM |
bodymap2_liver | 0 .00 RPM | 12 .93 RPM |
bodymap2_lung | 0 .00 RPM | 217 .30 RPM |
bodymap2_lymph_node | 0 .00 RPM | 138 .72 RPM |
bodymap2_ovary | 0 .00 RPM | 182 .32 RPM |
bodymap2_prostate | 0 .00 RPM | 86 .83 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .91 RPM |
bodymap2_testis | 0 .02 RPM | 39 .76 RPM |
bodymap2_thyroid | 0 .00 RPM | 73 .44 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 341 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1247 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000064666 | 16 retrocopies | |
Homo sapiens | ENSG00000117519 | 1 retrocopy | |
Homo sapiens | ENSG00000158710 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028153 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000015306 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004665 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009302 | 12 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .13 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .04 RPM |