RetrogeneDB ID: | retro_hsap_3505 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:111179441..111180128(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213149 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN2 | ||
Ensembl ID: | ENSG00000064666 | ||
Aliases: | None | ||
Description: | calponin 2 [Source:HGNC Symbol;Acc:2156] |
Percent Identity: | 88.65 % |
Parental protein coverage: | 74.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSSTQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPG |
MSSTQFNK.PSYGLSAE.KNRLL.KYDPQKE.ELR.WIEGLT.LSIGPDFQKGLKDG..L.TLMNKLQPG | |
Retrocopy | MSSTQFNKDPSYGLSAEIKNRLLCKYDPQKEVELRSWIEGLTSLSIGPDFQKGLKDGISLWTLMNKLQPG |
Parental | SVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQSGV |
SV.KINRSMQNWHQLENLSNFIKAMVSYGMN.VDLF.ANDLFESGNMTQ.QVSLLAL..KA.TKGLQSGV | |
Retrocopy | SVLKINRSMQNWHQLENLSNFIKAMVSYGMNTVDLFDANDLFESGNMTQLQVSLLALVSKARTKGLQSGV |
Parental | DIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQM |
DIG.KYSEKQE.NFDDATMKAGQC.IGLQMGTNKC.SQSGMTAY.TRRHLYDPKNHILPPMD..TISLQM | |
Retrocopy | DIGLKYSEKQEPNFDDATMKAGQCTIGLQMGTNKCTSQSGMTAYSTRRHLYDPKNHILPPMDNLTISLQM |
Parental | GTNKCASQVGMTAPGTRRH |
GTNKCASQVGMTAPG...H | |
Retrocopy | GTNKCASQVGMTAPGPG*H |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .32 RPM | 112 .57 RPM |
bodymap2_adrenal | 0 .20 RPM | 74 .98 RPM |
bodymap2_brain | 0 .12 RPM | 7 .85 RPM |
bodymap2_breast | 0 .06 RPM | 71 .30 RPM |
bodymap2_colon | 0 .06 RPM | 53 .46 RPM |
bodymap2_heart | 0 .00 RPM | 21 .03 RPM |
bodymap2_kidney | 0 .08 RPM | 45 .66 RPM |
bodymap2_liver | 0 .00 RPM | 12 .93 RPM |
bodymap2_lung | 0 .07 RPM | 217 .30 RPM |
bodymap2_lymph_node | 0 .02 RPM | 138 .72 RPM |
bodymap2_ovary | 0 .04 RPM | 182 .32 RPM |
bodymap2_prostate | 0 .10 RPM | 86 .83 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .91 RPM |
bodymap2_testis | 0 .21 RPM | 39 .76 RPM |
bodymap2_thyroid | 0 .13 RPM | 73 .44 RPM |
bodymap2_white_blood_cells | 0 .18 RPM | 341 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000064666 | 16 retrocopies | |
Homo sapiens | ENSG00000117519 | 1 retrocopy | |
Homo sapiens | ENSG00000158710 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028153 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000015306 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004665 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009302 | 12 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .32 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .46 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .51 RPM |
CEU_NA12760 | 0 .81 RPM |
CEU_NA12827 | 0 .28 RPM |
CEU_NA12872 | 0 .49 RPM |
CEU_NA12873 | 0 .45 RPM |
FIN_HG00183 | 0 .27 RPM |
FIN_HG00277 | 0 .48 RPM |
FIN_HG00315 | 0 .44 RPM |
FIN_HG00321 | 0 .45 RPM |
FIN_HG00328 | 0 .47 RPM |
FIN_HG00338 | 0 .28 RPM |
FIN_HG00349 | 0 .37 RPM |
FIN_HG00375 | 0 .44 RPM |
FIN_HG00377 | 0 .50 RPM |
FIN_HG00378 | 0 .40 RPM |
GBR_HG00099 | 0 .17 RPM |
GBR_HG00111 | 0 .21 RPM |
GBR_HG00114 | 0 .50 RPM |
GBR_HG00119 | 0 .77 RPM |
GBR_HG00131 | 0 .40 RPM |
GBR_HG00133 | 0 .63 RPM |
GBR_HG00134 | 0 .61 RPM |
GBR_HG00137 | 0 .44 RPM |
GBR_HG00142 | 0 .61 RPM |
GBR_HG00143 | 0 .19 RPM |
TSI_NA20512 | 0 .34 RPM |
TSI_NA20513 | 0 .46 RPM |
TSI_NA20518 | 0 .33 RPM |
TSI_NA20532 | 0 .58 RPM |
TSI_NA20538 | 0 .28 RPM |
TSI_NA20756 | 0 .26 RPM |
TSI_NA20765 | 0 .33 RPM |
TSI_NA20771 | 0 .43 RPM |
TSI_NA20786 | 0 .44 RPM |
TSI_NA20798 | 0 .28 RPM |
YRI_NA18870 | 0 .54 RPM |
YRI_NA18907 | 0 .59 RPM |
YRI_NA18916 | 0 .32 RPM |
YRI_NA19093 | 0 .42 RPM |
YRI_NA19099 | 0 .61 RPM |
YRI_NA19114 | 0 .47 RPM |
YRI_NA19118 | 0 .52 RPM |
YRI_NA19213 | 0 .53 RPM |
YRI_NA19214 | 0 .44 RPM |
YRI_NA19223 | 0 .74 RPM |