RetrogeneDB ID: | retro_hsap_122 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:22234590..22235070(+) | ||
Located in intron of: | ENSG00000142798 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232037 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSG00000122026 | ||
Aliases: | RPL21, L21 | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 91.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQH |
MTNTKGKRRGT..MFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKG.PHKCYHGKTGRVYNV.Q. | |
Retrocopy | MTNTKGKRRGTQ*MFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGTPHKCYHGKTGRVYNVIQY |
Parental | AVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHF |
A..IVVNKQVKGKILAKRINVRIEHIKHS.SRDSFLKRVKENDQKK.EAKEKGTWVQLKRQPAPP..AHF | |
Retrocopy | AASIVVNKQVKGKILAKRINVRIEHIKHSESRDSFLKRVKENDQKKREAKEKGTWVQLKRQPAPPSKAHF |
Parental | VRTNGKEPELLEPIPYEFMA |
VRTNGKEPELLEPI.YEF.A | |
Retrocopy | VRTNGKEPELLEPILYEFTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 80 .68 RPM |
bodymap2_adrenal | 0 .02 RPM | 121 .12 RPM |
bodymap2_brain | 0 .12 RPM | 35 .89 RPM |
bodymap2_breast | 0 .04 RPM | 60 .37 RPM |
bodymap2_colon | 0 .04 RPM | 99 .58 RPM |
bodymap2_heart | 0 .04 RPM | 111 .91 RPM |
bodymap2_kidney | 0 .02 RPM | 84 .83 RPM |
bodymap2_liver | 0 .06 RPM | 89 .65 RPM |
bodymap2_lung | 0 .02 RPM | 422 .43 RPM |
bodymap2_lymph_node | 0 .05 RPM | 336 .42 RPM |
bodymap2_ovary | 0 .04 RPM | 157 .01 RPM |
bodymap2_prostate | 0 .12 RPM | 418 .56 RPM |
bodymap2_skeletal_muscle | 0 .07 RPM | 150 .89 RPM |
bodymap2_testis | 0 .00 RPM | 54 .92 RPM |
bodymap2_thyroid | 0 .00 RPM | 74 .87 RPM |
bodymap2_white_blood_cells | 0 .22 RPM | 422 .68 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CMI | POLR2A | 1:22233339..22233855 |
ENCFF002CXN | POLR2A | 1:22233362..22233858 |
ENCFF002CXO | POLR2A | 1:22233393..22233817 |
ENCFF002CXP | POLR2A | 1:22233368..22233848 |
ENCFF002CXQ | POLR2A | 1:22233100..22233750 |
ENCFF002DBE | POLR2A | 1:22233341..22233837 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_90107 | 530 libraries | 695 libraries | 520 libraries | 69 libraries | 15 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |