RetrogeneDB ID: | retro_hsap_503 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:212224868..212225348(-) | ||
Located in intron of: | ENSG00000143476 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000220749 | |
Aliases: | RPL21P28, RPL21_8_160 | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSG00000122026 | ||
Aliases: | RPL21, L21 | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 99.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQH |
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG.GTVQKGMPHKCYHGKTGRVYNVTQH | |
Retrocopy | MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGTGTVQKGMPHKCYHGKTGRVYNVTQH |
Parental | AVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHF |
AVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHF | |
Retrocopy | AVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHF |
Parental | VRTNGKEPELLEPIPYEFMA |
VRTNGKEPELLEPIPYEFMA | |
Retrocopy | VRTNGKEPELLEPIPYEFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .14 RPM | 80 .68 RPM |
bodymap2_adrenal | 0 .33 RPM | 121 .12 RPM |
bodymap2_brain | 0 .02 RPM | 35 .89 RPM |
bodymap2_breast | 0 .16 RPM | 60 .37 RPM |
bodymap2_colon | 0 .15 RPM | 99 .58 RPM |
bodymap2_heart | 0 .92 RPM | 111 .91 RPM |
bodymap2_kidney | 0 .15 RPM | 84 .83 RPM |
bodymap2_liver | 0 .21 RPM | 89 .65 RPM |
bodymap2_lung | 1 .41 RPM | 422 .43 RPM |
bodymap2_lymph_node | 0 .99 RPM | 336 .42 RPM |
bodymap2_ovary | 0 .25 RPM | 157 .01 RPM |
bodymap2_prostate | 1 .18 RPM | 418 .56 RPM |
bodymap2_skeletal_muscle | 0 .53 RPM | 150 .89 RPM |
bodymap2_testis | 0 .21 RPM | 54 .92 RPM |
bodymap2_thyroid | 0 .21 RPM | 74 .87 RPM |
bodymap2_white_blood_cells | 10 .40 RPM | 422 .68 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_89383 | 333 libraries | 595 libraries | 847 libraries | 44 libraries | 10 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .86 RPM |
CEU_NA11843 | 1 .54 RPM |
CEU_NA11930 | 1 .11 RPM |
CEU_NA12004 | 1 .10 RPM |
CEU_NA12400 | 1 .75 RPM |
CEU_NA12751 | 0 .80 RPM |
CEU_NA12760 | 1 .44 RPM |
CEU_NA12827 | 1 .89 RPM |
CEU_NA12872 | 1 .01 RPM |
CEU_NA12873 | 1 .56 RPM |
FIN_HG00183 | 0 .91 RPM |
FIN_HG00277 | 0 .85 RPM |
FIN_HG00315 | 1 .13 RPM |
FIN_HG00321 | 0 .60 RPM |
FIN_HG00328 | 0 .62 RPM |
FIN_HG00338 | 1 .00 RPM |
FIN_HG00349 | 0 .97 RPM |
FIN_HG00375 | 1 .05 RPM |
FIN_HG00377 | 1 .08 RPM |
FIN_HG00378 | 0 .96 RPM |
GBR_HG00099 | 0 .76 RPM |
GBR_HG00111 | 1 .40 RPM |
GBR_HG00114 | 1 .00 RPM |
GBR_HG00119 | 0 .91 RPM |
GBR_HG00131 | 0 .66 RPM |
GBR_HG00133 | 1 .16 RPM |
GBR_HG00134 | 0 .94 RPM |
GBR_HG00137 | 0 .96 RPM |
GBR_HG00142 | 0 .94 RPM |
GBR_HG00143 | 1 .12 RPM |
TSI_NA20512 | 1 .70 RPM |
TSI_NA20513 | 0 .63 RPM |
TSI_NA20518 | 0 .44 RPM |
TSI_NA20532 | 1 .36 RPM |
TSI_NA20538 | 1 .61 RPM |
TSI_NA20756 | 1 .08 RPM |
TSI_NA20765 | 0 .73 RPM |
TSI_NA20771 | 1 .22 RPM |
TSI_NA20786 | 0 .92 RPM |
TSI_NA20798 | 1 .12 RPM |
YRI_NA18870 | 0 .81 RPM |
YRI_NA18907 | 0 .42 RPM |
YRI_NA18916 | 1 .14 RPM |
YRI_NA19093 | 1 .02 RPM |
YRI_NA19099 | 0 .88 RPM |
YRI_NA19114 | 1 .31 RPM |
YRI_NA19118 | 1 .37 RPM |
YRI_NA19213 | 0 .45 RPM |
YRI_NA19214 | 0 .59 RPM |
YRI_NA19223 | 0 .88 RPM |