Parental gene:

Rpl21, ENSMUSG00000041453

Aliases:Rpl21, 8430440E03Rik, L21
Description:ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
Organism:Mouse (Mus musculus)
Coordinates:5:146832889..146837032(+)


>ENSMUSG00000041453
ATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTT
GGCCACATACATGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCACTGTTCAAAAAGGAATGCCCC
ATAAGTGCTACCACGGCAAAACCGGAAGAGTCTACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTT
AAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAA
GCGGGTGAAGGAGAATGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGC
CACCCAGAGAAGCACACTTTGTGAGGACTAATGGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATACGAATTCATGGCC
TAA

Library Parental gene expression (RPM)
SRP007412_brain 120 .25 RPM
SRP007412_cerebellum 84 .19 RPM
SRP007412_heart 113 .97 RPM
SRP007412_kidney 114 .23 RPM
SRP007412_liver 90 .42 RPM
SRP007412_testis 66 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003169 possible_ortholog 1 retrogene
Bos taurus ENSBTAG00000001648 ortholog_many2many 5 retrogenes
Choloepus hoffmanni ENSCHOG00000007867 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000019355 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000008784 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000002226 possible_ortholog 15 retrogenes
Equus caballus ENSECAG00000010661 possible_ortholog 5 retrogenes
Felis catus ENSFCAG00000006750 possible_ortholog 1 retrogene
Homo sapiens ENSG00000122026 possible_ortholog 105 retrogenes
retro_hsap_1007, retro_hsap_1011, retro_hsap_1019, retro_hsap_1032, retro_hsap_1040, retro_hsap_1099, retro_hsap_1107, retro_hsap_1213, retro_hsap_1218, retro_hsap_122, retro_hsap_1280, retro_hsap_1288, retro_hsap_1298, retro_hsap_1379, retro_hsap_1381, retro_hsap_1419, retro_hsap_143, retro_hsap_1430, retro_hsap_1446, retro_hsap_1453, retro_hsap_1505, retro_hsap_1576, retro_hsap_1578, retro_hsap_160, retro_hsap_1600, retro_hsap_1663, retro_hsap_1712, retro_hsap_1723, retro_hsap_1734, retro_hsap_1757, retro_hsap_1805, retro_hsap_1842, retro_hsap_1886, retro_hsap_1904, retro_hsap_1920, retro_hsap_2050, retro_hsap_2088, retro_hsap_2109, retro_hsap_2153, retro_hsap_2178, retro_hsap_2221, retro_hsap_2245, retro_hsap_2258, retro_hsap_2266, retro_hsap_2357, retro_hsap_2442, retro_hsap_252, retro_hsap_2625, retro_hsap_2635, retro_hsap_2655, retro_hsap_2716, retro_hsap_2855, retro_hsap_2876, retro_hsap_2916, retro_hsap_2937, retro_hsap_3037, retro_hsap_3039, retro_hsap_3091, retro_hsap_3094, retro_hsap_3119, retro_hsap_3160, retro_hsap_3185, retro_hsap_3264, retro_hsap_3304, retro_hsap_3375, retro_hsap_3429, retro_hsap_3435, retro_hsap_3521, retro_hsap_3555, retro_hsap_3558, retro_hsap_362, retro_hsap_3628, retro_hsap_3658, retro_hsap_3662, retro_hsap_367, retro_hsap_3688, retro_hsap_3694, retro_hsap_3705, retro_hsap_3747, retro_hsap_3764, retro_hsap_381, retro_hsap_3911, retro_hsap_3945, retro_hsap_3955, retro_hsap_4092, retro_hsap_4193, retro_hsap_424, retro_hsap_4276, retro_hsap_4283, retro_hsap_4286, retro_hsap_4302, retro_hsap_4713, retro_hsap_4733, retro_hsap_496, retro_hsap_503, retro_hsap_563, retro_hsap_573, retro_hsap_582, retro_hsap_626, retro_hsap_654, retro_hsap_738, retro_hsap_752, retro_hsap_819, retro_hsap_900, retro_hsap_965,
Latimeria chalumnae ENSLACG00000012678 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000003677 possible_ortholog 11 retrogenes
Microcebus murinus ENSMICG00000014754 possible_ortholog 54 retrogenes
Myotis lucifugus ENSMLUG00000010093 ortholog_many2many 46 retrogenes
Macaca mulatta ENSMMUG00000023368 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000029574 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000008923 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000009353 possible_ortholog 23 retrogenes
Nomascus leucogenys ENSNLEG00000000327 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000002506 possible_ortholog 10 retrogenes
Otolemur garnettii ENSOGAG00000033936 possible_ortholog 4 retrogenes
Otolemur garnettii ENSOGAG00000034423 possible_ortholog 1 retrogene
Pongo abelii ENSPPYG00000005233 possible_ortholog 7 retrogenes
Pongo abelii ENSPPYG00000006167 possible_ortholog 2 retrogenes
Pan troglodytes ENSPTRG00000005728 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000000077 possible_ortholog 82 retrogenes
Rattus norvegicus ENSRNOG00000000957 ortholog_one2many 13 retrogenes
Sorex araneus ENSSARG00000013129 possible_ortholog 51 retrogenes
Sarcophilus harrisii ENSSHAG00000000845 possible_ortholog 11 retrogenes
Sus scrofa ENSSSCG00000009303 possible_ortholog 9 retrogenes
Vicugna pacos ENSVPAG00000006206 possible_ortholog 13 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_17 91.45 73.12
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2. retro_mmus_266 92.50 100.00
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3. retro_mmus_333 94.38 100.00
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4. retro_mmus_397 93.97 72.50
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5. retro_mmus_400 92.50 100.00
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6. retro_mmus_401 90.28 89.38
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7. retro_mmus_598 64.29 61.25
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8. retro_mmus_601 76.92 97.50
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9. retro_mmus_606 95.62 100.00
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10. retro_mmus_663 78.26 56.88
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11. retro_mmus_734 85.71 100.00
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12. retro_mmus_735 86.67 83.75
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13. retro_mmus_758 95.10 63.75
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14. retro_mmus_782 88.61 98.12
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15. retro_mmus_806 92.50 100.00
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16. retro_mmus_835 99.38 100.00
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17. retro_mmus_862 93.12 100.00
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18. retro_mmus_883 95.62 99.38
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19. retro_mmus_918 85.19 100.00
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20. retro_mmus_932 53.38 81.88
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21. retro_mmus_940 95.62 100.00
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22. retro_mmus_957 97.14 87.50
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23. retro_mmus_993 93.75 100.00
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24. retro_mmus_998 72.67 100.00
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25. retro_mmus_1012 82.82 100.00
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26. retro_mmus_1046 90.06 100.00
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27. retro_mmus_1057 94.38 100.00
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28. retro_mmus_1083 89.51 100.00
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29. retro_mmus_1123 91.30 100.00
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30. retro_mmus_1199 94.38 100.00
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31. retro_mmus_1287 95.62 100.00
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32. retro_mmus_1354 100.00 100.00
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33. retro_mmus_1461 68.09 87.50
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34. retro_mmus_1475 73.46 99.38
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35. retro_mmus_1529 93.75 100.00
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36. retro_mmus_1561 98.12 100.00
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37. retro_mmus_1572 98.12 100.00
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38. retro_mmus_1596 96.25 100.00
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39. retro_mmus_1617 97.52 99.38
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40. retro_mmus_1641 51.75 69.38
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41. retro_mmus_1644 91.88 100.00
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42. retro_mmus_1714 96.30 100.00
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43. retro_mmus_1739 86.15 79.38
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44. retro_mmus_1762 95.03 100.00
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45. retro_mmus_1797 99.38 100.00
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46. retro_mmus_1848 92.50 100.00
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47. retro_mmus_1860 58.16 60.00
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48. retro_mmus_1862 57.32 99.38
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49. retro_mmus_1875 95.62 100.00
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50. retro_mmus_1897 100.00 100.00
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51. retro_mmus_1915 89.61 96.25
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52. retro_mmus_1931 94.38 100.00
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53. retro_mmus_1936 97.50 100.00
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54. retro_mmus_1994 91.25 100.00
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55. retro_mmus_2042 96.25 99.38
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56. retro_mmus_2049 58.33 65.62
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57. retro_mmus_2101 90.06 100.00
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58. retro_mmus_2130 91.09 62.50
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59. retro_mmus_2176 70.12 100.00
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60. retro_mmus_2179 95.79 59.38
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61. retro_mmus_2185 83.46 77.50
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62. retro_mmus_2214 78.88 100.00
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63. retro_mmus_2233 65.38 93.75
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64. retro_mmus_2237 88.61 98.12
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65. retro_mmus_2238 98.12 100.00
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66. retro_mmus_2279 93.12 100.00
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67. retro_mmus_2309 94.94 98.75
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68. retro_mmus_2312 94.78 83.75
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69. retro_mmus_2335 83.96 66.25
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70. retro_mmus_2344 98.12 100.00
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71. retro_mmus_2395 94.59 68.75
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72. retro_mmus_2447 86.88 100.00
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73. retro_mmus_2517 82.82 100.00
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74. retro_mmus_2567 85.09 100.00
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75. retro_mmus_2585 63.46 96.25
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76. retro_mmus_2598 97.52 100.00
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77. retro_mmus_2662 98.12 100.00
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78. retro_mmus_2698 94.38 100.00
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79. retro_mmus_2707 89.51 99.38
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80. retro_mmus_2778 77.02 100.00
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81. retro_mmus_2808 93.79 100.00
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82. retro_mmus_2853 95.00 100.00
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83. retro_mmus_2874 95.62 100.00
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84. retro_mmus_2945 80.98 100.00
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85. retro_mmus_2980 95.62 100.00
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86. retro_mmus_3035 82.86 65.00
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87. retro_mmus_3055 89.60 76.88
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88. retro_mmus_3085 98.12 100.00
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89. retro_mmus_3103 95.00 100.00
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90. retro_mmus_3112 91.98 100.00
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91. retro_mmus_3220 96.88 100.00
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92. retro_mmus_3252 96.27 100.00
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93. retro_mmus_3261 94.16 85.62
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94. retro_mmus_3295 100.00 100.00
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95. retro_mmus_3318 93.12 100.00
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96. retro_mmus_3328 87.50 100.00
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97. retro_mmus_3341 91.16 90.62
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98. retro_mmus_3446 100.00 100.00
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99. retro_mmus_3545 63.85 80.00
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100. retro_mmus_3581 53.68 56.25
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101. retro_mmus_3712 100.00 100.00
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Download FASTA sequences of all ENSMUSG00000041453 retrocopies