Parental gene:

Rpl21, ENSMUSG00000041453

Aliases:Rpl21, 8430440E03Rik, L21
Description:ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
Organism:Mouse (Mus musculus)
Coordinates:5:146832889..146837032(+)


>ENSMUSG00000041453
ATGACGAACACAAAGGGAAAGAGGAGAGGCACCCGGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTT
GGCCACATACATGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCACTGTTCAAAAAGGAATGCCCC
ATAAGTGCTACCACGGCAAAACCGGAAGAGTCTACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTT
AAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAA
GCGGGTGAAGGAGAATGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGC
CACCCAGAGAAGCACACTTTGTGAGGACTAATGGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATACGAATTCATGGCC
TAA

Library Parental gene expression (RPM)
SRP007412_brain 120 .25 RPM
SRP007412_cerebellum 84 .19 RPM
SRP007412_heart 113 .97 RPM
SRP007412_kidney 114 .23 RPM
SRP007412_liver 90 .42 RPM
SRP007412_testis 66 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003169 possible_ortholog 1 retrogene
retro_acar_153,
Bos taurus ENSBTAG00000001648 ortholog_many2many 5 retrogenes
retro_btau_1383, retro_btau_194, retro_btau_209, retro_btau_93, retro_btau_976,
Choloepus hoffmanni ENSCHOG00000007867 possible_ortholog 6 retrogenes
retro_chof_1472, retro_chof_1596, retro_chof_2421, retro_chof_2454, retro_chof_266, retro_chof_572,
Callithrix jacchus ENSCJAG00000019355 possible_ortholog 1 retrogene
retro_cjac_152,
Cavia porcellus ENSCPOG00000008784 possible_ortholog 3 retrogenes
retro_cpor_2, retro_cpor_26, retro_cpor_41,
Dipodomys ordii ENSDORG00000002226 possible_ortholog 15 retrogenes
retro_dord_119, retro_dord_149, retro_dord_152, retro_dord_186, retro_dord_189, retro_dord_203, retro_dord_211, retro_dord_247, retro_dord_285, retro_dord_348, retro_dord_488, retro_dord_493, retro_dord_59, retro_dord_761, retro_dord_768,
Equus caballus ENSECAG00000010661 possible_ortholog 5 retrogenes
retro_ecab_16, retro_ecab_24, retro_ecab_39, retro_ecab_88, retro_ecab_90,
Felis catus ENSFCAG00000006750 possible_ortholog 1 retrogene
retro_fcat_64,
Homo sapiens ENSG00000122026 possible_ortholog 105 retrogenes
retro_hsap_1007, retro_hsap_1011, retro_hsap_1019, retro_hsap_1032, retro_hsap_1040, retro_hsap_1099, retro_hsap_1107, retro_hsap_1213, retro_hsap_1218, retro_hsap_122, retro_hsap_1280, retro_hsap_1288, retro_hsap_1298, retro_hsap_1379, retro_hsap_1381, retro_hsap_1419, retro_hsap_143, retro_hsap_1430, retro_hsap_1446, retro_hsap_1453, retro_hsap_1505, retro_hsap_1576, retro_hsap_1578, retro_hsap_160, retro_hsap_1600, retro_hsap_1663, retro_hsap_1712, retro_hsap_1723, retro_hsap_1734, retro_hsap_1757, retro_hsap_1805, retro_hsap_1842, retro_hsap_1886, retro_hsap_1904, retro_hsap_1920, retro_hsap_2050, retro_hsap_2088, retro_hsap_2109, retro_hsap_2153, retro_hsap_2178, retro_hsap_2221, retro_hsap_2245, retro_hsap_2258, retro_hsap_2266, retro_hsap_2357, retro_hsap_2442, retro_hsap_252, retro_hsap_2625, retro_hsap_2635, retro_hsap_2655, retro_hsap_2716, retro_hsap_2855, retro_hsap_2876, retro_hsap_2916, retro_hsap_2937, retro_hsap_3037, retro_hsap_3039, retro_hsap_3091, retro_hsap_3094, retro_hsap_3119, retro_hsap_3160, retro_hsap_3185, retro_hsap_3264, retro_hsap_3304, retro_hsap_3375, retro_hsap_3429, retro_hsap_3435, retro_hsap_3521, retro_hsap_3555, retro_hsap_3558, retro_hsap_362, retro_hsap_3628, retro_hsap_3658, retro_hsap_3662, retro_hsap_367, retro_hsap_3688, retro_hsap_3694, retro_hsap_3705, retro_hsap_3747, retro_hsap_3764, retro_hsap_381, retro_hsap_3911, retro_hsap_3945, retro_hsap_3955, retro_hsap_4092, retro_hsap_4193, retro_hsap_424, retro_hsap_4276, retro_hsap_4283, retro_hsap_4286, retro_hsap_4302, retro_hsap_4713, retro_hsap_4733, retro_hsap_496, retro_hsap_503, retro_hsap_563, retro_hsap_573, retro_hsap_582, retro_hsap_626, retro_hsap_654, retro_hsap_738, retro_hsap_752, retro_hsap_819, retro_hsap_900, retro_hsap_965,
Latimeria chalumnae ENSLACG00000012678 ortholog_one2many 1 retrogene
retro_lcha_32,
Loxodonta africana ENSLAFG00000003677 possible_ortholog 11 retrogenes
retro_lafr_1167, retro_lafr_308, retro_lafr_331, retro_lafr_583, retro_lafr_63, retro_lafr_652, retro_lafr_738, retro_lafr_740, retro_lafr_856, retro_lafr_89, retro_lafr_97,
Microcebus murinus ENSMICG00000014754 possible_ortholog 54 retrogenes
retro_mmur_1011, retro_mmur_1019, retro_mmur_1078, retro_mmur_1200, retro_mmur_1232, retro_mmur_1276, retro_mmur_1293, retro_mmur_1329, retro_mmur_1337, retro_mmur_1348, retro_mmur_1395, retro_mmur_1448, retro_mmur_1451, retro_mmur_146, retro_mmur_1464, retro_mmur_1524, retro_mmur_1533, retro_mmur_1587, retro_mmur_1598, retro_mmur_1616, retro_mmur_1623, retro_mmur_1632, retro_mmur_177, retro_mmur_234, retro_mmur_251, retro_mmur_296, retro_mmur_310, retro_mmur_328, retro_mmur_385, retro_mmur_405, retro_mmur_418, retro_mmur_434, retro_mmur_437, retro_mmur_438, retro_mmur_478, retro_mmur_489, retro_mmur_539, retro_mmur_541, retro_mmur_547, retro_mmur_627, retro_mmur_645, retro_mmur_655, retro_mmur_719, retro_mmur_73, retro_mmur_774, retro_mmur_790, retro_mmur_801, retro_mmur_805, retro_mmur_847, retro_mmur_865, retro_mmur_867, retro_mmur_869, retro_mmur_94, retro_mmur_964,
Myotis lucifugus ENSMLUG00000010093 ortholog_many2many 46 retrogenes
retro_mluc_1066, retro_mluc_1079, retro_mluc_1138, retro_mluc_1164, retro_mluc_1171, retro_mluc_1219, retro_mluc_1274, retro_mluc_1279, retro_mluc_1307, retro_mluc_1323, retro_mluc_1379, retro_mluc_1382, retro_mluc_1409, retro_mluc_1413, retro_mluc_1469, retro_mluc_1481, retro_mluc_1525, retro_mluc_162, retro_mluc_1647, retro_mluc_1753, retro_mluc_1803, retro_mluc_1849, retro_mluc_1862, retro_mluc_1929, retro_mluc_1969, retro_mluc_1981, retro_mluc_2044, retro_mluc_2077, retro_mluc_2109, retro_mluc_2121, retro_mluc_2212, retro_mluc_230, retro_mluc_2335, retro_mluc_2338, retro_mluc_2436, retro_mluc_2592, retro_mluc_27, retro_mluc_279, retro_mluc_360, retro_mluc_503, retro_mluc_554, retro_mluc_620, retro_mluc_631, retro_mluc_806, retro_mluc_961, retro_mluc_97,
Macaca mulatta ENSMMUG00000023368 possible_ortholog 2 retrogenes
retro_mmul_288, retro_mmul_45,
Macaca mulatta ENSMMUG00000029574 possible_ortholog 2 retrogenes
retro_mmul_1289, retro_mmul_219,
Monodelphis domestica ENSMODG00000008923 possible_ortholog 1 retrogene
retro_mdom_156,
Mustela putorius furo ENSMPUG00000009353 possible_ortholog 23 retrogenes
retro_mputfur_1083, retro_mputfur_1117, retro_mputfur_1203, retro_mputfur_1342, retro_mputfur_1345, retro_mputfur_1498, retro_mputfur_196, retro_mputfur_208, retro_mputfur_248, retro_mputfur_256, retro_mputfur_310, retro_mputfur_311, retro_mputfur_398, retro_mputfur_580, retro_mputfur_584, retro_mputfur_699, retro_mputfur_700, retro_mputfur_796, retro_mputfur_806, retro_mputfur_903, retro_mputfur_934, retro_mputfur_991, retro_mputfur_992,
Nomascus leucogenys ENSNLEG00000000327 possible_ortholog 6 retrogenes
retro_nleu_112, retro_nleu_1144, retro_nleu_26, retro_nleu_713, retro_nleu_95, retro_nleu_951,
Oryctolagus cuniculus ENSOCUG00000002506 possible_ortholog 10 retrogenes
retro_ocun_104, retro_ocun_122, retro_ocun_125, retro_ocun_159, retro_ocun_163, retro_ocun_186, retro_ocun_198, retro_ocun_209, retro_ocun_232, retro_ocun_86,
Otolemur garnettii ENSOGAG00000033936 possible_ortholog 4 retrogenes
retro_ogar_1787, retro_ogar_2621, retro_ogar_3093, retro_ogar_416,
Otolemur garnettii ENSOGAG00000034423 possible_ortholog 1 retrogene
retro_ogar_3296,
Pongo abelii ENSPPYG00000005233 possible_ortholog 7 retrogenes
retro_pabe_1173, retro_pabe_1404, retro_pabe_1437, retro_pabe_3494, retro_pabe_52, retro_pabe_54, retro_pabe_65,
Pongo abelii ENSPPYG00000006167 possible_ortholog 2 retrogenes
retro_pabe_1617, retro_pabe_327,
Pan troglodytes ENSPTRG00000005728 possible_ortholog 1 retrogene
retro_ptro_66,
Pteropus vampyrus ENSPVAG00000000077 possible_ortholog 82 retrogenes
retro_pvam_1010, retro_pvam_1012, retro_pvam_1013, retro_pvam_1015, retro_pvam_1030, retro_pvam_1038, retro_pvam_1041, retro_pvam_1050, retro_pvam_1073, retro_pvam_1098, retro_pvam_1103, retro_pvam_1106, retro_pvam_1109, retro_pvam_1123, retro_pvam_120, retro_pvam_1210, retro_pvam_1212, retro_pvam_124, retro_pvam_1247, retro_pvam_1248, retro_pvam_1256, retro_pvam_126, retro_pvam_1262, retro_pvam_1281, retro_pvam_1296, retro_pvam_1308, retro_pvam_1377, retro_pvam_1381, retro_pvam_1393, retro_pvam_1425, retro_pvam_1438, retro_pvam_1459, retro_pvam_1468, retro_pvam_170, retro_pvam_195, retro_pvam_223, retro_pvam_226, retro_pvam_253, retro_pvam_256, retro_pvam_26, retro_pvam_286, retro_pvam_318, retro_pvam_319, retro_pvam_329, retro_pvam_374, retro_pvam_408, retro_pvam_412, retro_pvam_416, retro_pvam_452, retro_pvam_489, retro_pvam_492, retro_pvam_495, retro_pvam_555, retro_pvam_569, retro_pvam_570, retro_pvam_589, retro_pvam_662, retro_pvam_693, retro_pvam_707, retro_pvam_731, retro_pvam_740, retro_pvam_760, retro_pvam_763, retro_pvam_768, retro_pvam_772, retro_pvam_791, retro_pvam_811, retro_pvam_820, retro_pvam_821, retro_pvam_825, retro_pvam_826, retro_pvam_833, retro_pvam_836, retro_pvam_839, retro_pvam_860, retro_pvam_885, retro_pvam_915, retro_pvam_916, retro_pvam_937, retro_pvam_946, retro_pvam_965, retro_pvam_985,
Rattus norvegicus ENSRNOG00000000957 ortholog_one2many 13 retrogenes
retro_rnor_227, retro_rnor_298, retro_rnor_319, retro_rnor_329, retro_rnor_330, retro_rnor_333, retro_rnor_365, retro_rnor_366, retro_rnor_416, retro_rnor_5, retro_rnor_79, retro_rnor_81, retro_rnor_82,
Sorex araneus ENSSARG00000013129 possible_ortholog 51 retrogenes
retro_sara_107, retro_sara_112, retro_sara_120, retro_sara_129, retro_sara_133, retro_sara_138, retro_sara_140, retro_sara_155, retro_sara_159, retro_sara_170, retro_sara_187, retro_sara_191, retro_sara_193, retro_sara_206, retro_sara_210, retro_sara_226, retro_sara_252, retro_sara_261, retro_sara_286, retro_sara_301, retro_sara_317, retro_sara_343, retro_sara_350, retro_sara_386, retro_sara_406, retro_sara_426, retro_sara_44, retro_sara_46, retro_sara_48, retro_sara_480, retro_sara_485, retro_sara_50, retro_sara_500, retro_sara_502, retro_sara_513, retro_sara_519, retro_sara_520, retro_sara_562, retro_sara_619, retro_sara_622, retro_sara_642, retro_sara_649, retro_sara_652, retro_sara_673, retro_sara_674, retro_sara_677, retro_sara_698, retro_sara_720, retro_sara_729, retro_sara_754, retro_sara_98,
Sarcophilus harrisii ENSSHAG00000000845 possible_ortholog 11 retrogenes
retro_shar_224, retro_shar_446, retro_shar_499, retro_shar_531, retro_shar_534, retro_shar_601, retro_shar_664, retro_shar_67, retro_shar_683, retro_shar_729, retro_shar_757,
Sus scrofa ENSSSCG00000009303 possible_ortholog 9 retrogenes
retro_sscr_1144, retro_sscr_1188, retro_sscr_336, retro_sscr_343, retro_sscr_624, retro_sscr_674, retro_sscr_741, retro_sscr_837, retro_sscr_863,
Vicugna pacos ENSVPAG00000006206 possible_ortholog 13 retrogenes
retro_vpac_129, retro_vpac_140, retro_vpac_147, retro_vpac_174, retro_vpac_187, retro_vpac_273, retro_vpac_298, retro_vpac_388, retro_vpac_394, retro_vpac_593, retro_vpac_600, retro_vpac_61, retro_vpac_633,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_17 91.45 73.12
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2. retro_mmus_266 92.50 100.00
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3. retro_mmus_333 94.38 100.00
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4. retro_mmus_397 93.97 72.50
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5. retro_mmus_400 92.50 100.00
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6. retro_mmus_401 90.28 89.38
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7. retro_mmus_598 64.29 61.25
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8. retro_mmus_601 76.92 97.50
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9. retro_mmus_606 95.62 100.00
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10. retro_mmus_663 78.26 56.88
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11. retro_mmus_734 85.71 100.00
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12. retro_mmus_735 86.67 83.75
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13. retro_mmus_758 95.10 63.75
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14. retro_mmus_782 88.61 98.12
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15. retro_mmus_806 92.50 100.00
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16. retro_mmus_835 99.38 100.00
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17. retro_mmus_862 93.12 100.00
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18. retro_mmus_883 95.62 99.38
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19. retro_mmus_918 85.19 100.00
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20. retro_mmus_932 53.38 81.88
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21. retro_mmus_940 95.62 100.00
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22. retro_mmus_957 97.14 87.50
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23. retro_mmus_993 93.75 100.00
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24. retro_mmus_998 72.67 100.00
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25. retro_mmus_1012 82.82 100.00
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26. retro_mmus_1046 90.06 100.00
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27. retro_mmus_1057 94.38 100.00
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28. retro_mmus_1083 89.51 100.00
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29. retro_mmus_1123 91.30 100.00
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30. retro_mmus_1199 94.38 100.00
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31. retro_mmus_1287 95.62 100.00
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32. retro_mmus_1354 100.00 100.00
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33. retro_mmus_1461 68.09 87.50
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34. retro_mmus_1475 73.46 99.38
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35. retro_mmus_1529 93.75 100.00
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36. retro_mmus_1561 98.12 100.00
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37. retro_mmus_1572 98.12 100.00
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38. retro_mmus_1596 96.25 100.00
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39. retro_mmus_1617 97.52 99.38
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40. retro_mmus_1641 51.75 69.38
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41. retro_mmus_1644 91.88 100.00
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42. retro_mmus_1714 96.30 100.00
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43. retro_mmus_1739 86.15 79.38
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44. retro_mmus_1762 95.03 100.00
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45. retro_mmus_1797 99.38 100.00
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46. retro_mmus_1848 92.50 100.00
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47. retro_mmus_1860 58.16 60.00
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48. retro_mmus_1862 57.32 99.38
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49. retro_mmus_1875 95.62 100.00
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50. retro_mmus_1897 100.00 100.00
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51. retro_mmus_1915 89.61 96.25
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52. retro_mmus_1931 94.38 100.00
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53. retro_mmus_1936 97.50 100.00
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54. retro_mmus_1994 91.25 100.00
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55. retro_mmus_2042 96.25 99.38
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56. retro_mmus_2049 58.33 65.62
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57. retro_mmus_2101 90.06 100.00
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58. retro_mmus_2130 91.09 62.50
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59. retro_mmus_2176 70.12 100.00
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60. retro_mmus_2179 95.79 59.38
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61. retro_mmus_2185 83.46 77.50
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62. retro_mmus_2214 78.88 100.00
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63. retro_mmus_2233 65.38 93.75
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64. retro_mmus_2237 88.61 98.12
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65. retro_mmus_2238 98.12 100.00
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66. retro_mmus_2279 93.12 100.00
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67. retro_mmus_2309 94.94 98.75
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68. retro_mmus_2312 94.78 83.75
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69. retro_mmus_2335 83.96 66.25
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70. retro_mmus_2344 98.12 100.00
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71. retro_mmus_2395 94.59 68.75
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72. retro_mmus_2447 86.88 100.00
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73. retro_mmus_2517 82.82 100.00
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74. retro_mmus_2567 85.09 100.00
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75. retro_mmus_2585 63.46 96.25
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76. retro_mmus_2598 97.52 100.00
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77. retro_mmus_2662 98.12 100.00
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78. retro_mmus_2698 94.38 100.00
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79. retro_mmus_2707 89.51 99.38
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80. retro_mmus_2778 77.02 100.00
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81. retro_mmus_2808 93.79 100.00
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82. retro_mmus_2853 95.00 100.00
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83. retro_mmus_2874 95.62 100.00
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84. retro_mmus_2945 80.98 100.00
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85. retro_mmus_2980 95.62 100.00
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86. retro_mmus_3035 82.86 65.00
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87. retro_mmus_3055 89.60 76.88
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88. retro_mmus_3085 98.12 100.00
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89. retro_mmus_3103 95.00 100.00
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90. retro_mmus_3112 91.98 100.00
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91. retro_mmus_3220 96.88 100.00
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92. retro_mmus_3252 96.27 100.00
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93. retro_mmus_3261 94.16 85.62
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94. retro_mmus_3295 100.00 100.00
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95. retro_mmus_3318 93.12 100.00
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96. retro_mmus_3328 87.50 100.00
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97. retro_mmus_3341 91.16 90.62
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98. retro_mmus_3446 100.00 100.00
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99. retro_mmus_3545 63.85 80.00
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100. retro_mmus_3581 53.68 56.25
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101. retro_mmus_3712 100.00 100.00
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Download FASTA sequences of all ENSMUSG00000041453 retrocopies