RetrogeneDB ID: | retro_hsap_1531 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:102102738..102103179(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259464 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSG00000124562 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 63.09 % |
Parental protein coverage: | 81.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPS |
LTH.SPS.RKT...G.KHKE..KD...K.MEEQA.SL...TTAAFQQG..PP.PFS.PPPAGA.IP.PP. | |
Retrocopy | LTHESPSARKTQGGGGKHKEDRKDLRRKGMEEQAPSLMHRTTAAFQQGRTPPAPFSTPPPAGAGIPLPPA |
Parental | LPG-PPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGP-PMMRPPARPMMVPT |
....P..PG.MPAP.MGGPPM.P..GPPPP.....GPAPGMRPPMG.HMP..P.P.P.M.PP...M..PT | |
Retrocopy | PRS>PRHPGVMPAPSMGGPPMVPVTGPPPPEGDAMGPAPGMRPPMGCHMPVLPRP<PRMSPPTHRMVEPT |
Parental | RPGMTRPDR |
.P..T.PDR | |
Retrocopy | QPRITKPDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 16 .28 RPM |
bodymap2_adrenal | 0 .00 RPM | 31 .52 RPM |
bodymap2_brain | 0 .00 RPM | 15 .14 RPM |
bodymap2_breast | 0 .00 RPM | 17 .49 RPM |
bodymap2_colon | 0 .00 RPM | 19 .55 RPM |
bodymap2_heart | 0 .00 RPM | 37 .37 RPM |
bodymap2_kidney | 0 .00 RPM | 21 .86 RPM |
bodymap2_liver | 0 .00 RPM | 20 .30 RPM |
bodymap2_lung | 0 .00 RPM | 18 .11 RPM |
bodymap2_lymph_node | 0 .00 RPM | 26 .79 RPM |
bodymap2_ovary | 0 .00 RPM | 20 .88 RPM |
bodymap2_prostate | 0 .00 RPM | 32 .53 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .50 RPM |
bodymap2_testis | 0 .00 RPM | 49 .11 RPM |
bodymap2_thyroid | 0 .00 RPM | 29 .04 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 27 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1037 |
Pongo abelii | retro_pabe_1271 |
Callithrix jacchus | retro_cjac_2785 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000024549 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001231 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000015321 | 16 retrocopies | |
Homo sapiens | ENSG00000124562 | 6 retrocopies |
retro_hsap_1531 , retro_hsap_1866, retro_hsap_2865, retro_hsap_3195, retro_hsap_3829, retro_hsap_4241,
|
Loxodonta africana | ENSLAFG00000013534 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013904 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008392 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000026668 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000008755 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000017272 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000000945 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |