RetrogeneDB - Parental gene ENSCJAG00000015321 details

Parental gene:	ENSCJAG00000015321
Aliases:	None
Description:	U1 small nuclear ribonucleoprotein C [Source:UniProtKB/TrEMBL;Acc:F6XG37]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	4:35647948..35665387(+)

                            
>ENSCJAG00000015321
ATGAACAGCGCTTCCGTGGATGGGTATCTAACTGGTTGTCATCTTCTCTTTTTCCTTCCACCTCTTTTCAGGTTTTATTG

TGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGGTAGGAAACACAAAGAGA

ATGTGAAAGACTACTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAACGGCTGCATTTCAACAA

GGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCGATGATACCACCTCCCCCAAGTCTTCCGGGTCC

TCCTCGCCCTGGTATGATGCCAGCACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTGGGA

TGATGCCGGTGGGACCTGCTCCTGGAATGAGGCCACCCATGGGAGGCCATATGCCAATGATGCCTGGGCCCCCAATGATG

AGACCTCCTGCCCGTCCCATGATGGTGCCCACTCGGCCTGGAATGACTCGACCAGACAGA

Library	Parental gene expression (RPM)
SRP051959_colon	8 .36 RPM
SRP051959_heart	8 .61 RPM
SRP051959_kidney	8 .43 RPM
SRP051959_liver	8 .53 RPM
SRP051959_lung	9 .89 RPM
SRP051959_lymph_node	8 .97 RPM
SRP051959_skeletal_muscle	12 .51 RPM
SRP051959_spleen	9 .31 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000000963	ortholog_one2one	7 retrogenes	retro_amel_1237, retro_amel_1249, retro_amel_149, retro_amel_1522, retro_amel_1523, retro_amel_592, retro_amel_988,
Bos taurus	ENSBTAG00000024549	possible_ortholog	1 retrogene	retro_btau_1636,
Canis familiaris	ENSCAFG00000001231	possible_ortholog	3 retrogenes	retro_cfam_348, retro_cfam_402, retro_cfam_409,
Cavia porcellus	ENSCPOG00000008563	ortholog_one2one	3 retrogenes	retro_cpor_1529, retro_cpor_1540, retro_cpor_288,
Felis catus	ENSFCAG00000005876	ortholog_one2one	12 retrogenes	retro_fcat_1008, retro_fcat_1088, retro_fcat_1265, retro_fcat_1545, retro_fcat_1599, retro_fcat_161, retro_fcat_1664, retro_fcat_1814, retro_fcat_446, retro_fcat_578, retro_fcat_627, retro_fcat_922,
Homo sapiens	ENSG00000124562	possible_ortholog	6 retrogenes	retro_hsap_1531, retro_hsap_1866, retro_hsap_2865, retro_hsap_3195, retro_hsap_3829, retro_hsap_4241,
Gorilla gorilla	ENSGGOG00000012499	ortholog_one2one	7 retrogenes	retro_ggor_1169, retro_ggor_1333, retro_ggor_1364, retro_ggor_1981, retro_ggor_2577, retro_ggor_2699, retro_ggor_2842,
Loxodonta africana	ENSLAFG00000013534	possible_ortholog	2 retrogenes	retro_lafr_621, retro_lafr_878,
Myotis lucifugus	ENSMLUG00000002488	ortholog_one2one	8 retrogenes	retro_mluc_1246, retro_mluc_1627, retro_mluc_2020, retro_mluc_2099, retro_mluc_2144, retro_mluc_2332, retro_mluc_735, retro_mluc_962,
Macaca mulatta	ENSMMUG00000000869	ortholog_one2one	9 retrogenes	retro_mmul_1148, retro_mmul_1161, retro_mmul_1343, retro_mmul_1465, retro_mmul_1573, retro_mmul_1626, retro_mmul_2016, retro_mmul_2314, retro_mmul_678,
Monodelphis domestica	ENSMODG00000013904	possible_ortholog	1 retrogene	retro_mdom_22,
Mustela putorius furo	ENSMPUG00000003210	ortholog_one2one	7 retrogenes	retro_mputfur_1233, retro_mputfur_1260, retro_mputfur_1396, retro_mputfur_374, retro_mputfur_441, retro_mputfur_519, retro_mputfur_531,
Mus musculus	ENSMUSG00000024217	possible_ortholog	21 retrogenes	retro_mmus_1079, retro_mmus_1084, retro_mmus_1231, retro_mmus_1313, retro_mmus_1374, retro_mmus_1400, retro_mmus_1515, retro_mmus_1649, retro_mmus_1673, retro_mmus_1781, retro_mmus_1876, retro_mmus_2087, retro_mmus_2211, retro_mmus_2506, retro_mmus_2973, retro_mmus_3089, retro_mmus_3366, retro_mmus_431, retro_mmus_531, retro_mmus_566, retro_mmus_638,
Nomascus leucogenys	ENSNLEG00000008392	ortholog_one2one	2 retrogenes	retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus	ENSOCUG00000026668	possible_ortholog	3 retrogenes	retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii	ENSOGAG00000008755	ortholog_one2one	9 retrogenes	retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Procavia capensis	ENSPCAG00000016885	ortholog_one2one	1 retrogene	retro_pcap_34,
Pongo abelii	ENSPPYG00000029902	possible_ortholog	3 retrogenes	retro_pabe_2367, retro_pabe_3397, retro_pabe_3524,
Pan troglodytes	ENSPTRG00000018070	ortholog_one2one	6 retrogenes	retro_ptro_1037, retro_ptro_1283, retro_ptro_1937, retro_ptro_2249, retro_ptro_2606, retro_ptro_2883,
Pteropus vampyrus	ENSPVAG00000015597	ortholog_one2one	1 retrogene	retro_pvam_1213,
Rattus norvegicus	ENSRNOG00000000493	possible_ortholog	30 retrogenes	retro_rnor_1027, retro_rnor_1079, retro_rnor_1100, retro_rnor_1196, retro_rnor_1219, retro_rnor_1421, retro_rnor_1628, retro_rnor_1637, retro_rnor_1701, retro_rnor_1761, retro_rnor_2259, retro_rnor_2261, retro_rnor_2385, retro_rnor_2480, retro_rnor_2663, retro_rnor_2875, retro_rnor_2893, retro_rnor_445, retro_rnor_483, retro_rnor_495, retro_rnor_502, retro_rnor_630, retro_rnor_705, retro_rnor_706, retro_rnor_707, retro_rnor_730, retro_rnor_747, retro_rnor_778, retro_rnor_802, retro_rnor_889,
Sarcophilus harrisii	ENSSHAG00000000945	possible_ortholog	1 retrogene	retro_shar_112,
Sus scrofa	ENSSSCG00000001531	possible_ortholog	1 retrogene	retro_sscr_709,
Ictidomys tridecemlineatus	ENSSTOG00000013786	ortholog_one2one	3 retrogenes	retro_itri_1278, retro_itri_1374, retro_itri_861,
Tarsius syrichta	ENSTSYG00000011216	ortholog_one2one	6 retrogenes	retro_tsyr_1198, retro_tsyr_1475, retro_tsyr_1746, retro_tsyr_185, retro_tsyr_260, retro_tsyr_690,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_400	97.48	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_617	64.19	80.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_770	76.92	96.23	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_873	72.46	83.65	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_1009	63.52	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_1015	80.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_1064	77.48	60.56	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_1750	69.23	89.31	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_1937	98.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_2014	75.74	75.56	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_2395	75.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_2456	88.28	80.50	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cjac_2785	59.29	75.56	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cjac_3056	66.88	98.11	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cjac_3110	94.38	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cjac_4010	68.47	68.55	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000015321 retrocopies

Parental gene:

ENSCJAG00000015321