RetrogeneDB ID: | retro_hsap_1875 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:24179369..24180303(+) | ||
Located in intron of: | ENSG00000134504 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000263846 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CIAPIN1 | ||
Ensembl ID: | ENSG00000005194 | ||
Aliases: | CIAPIN1, 2810413N20Rik, Anamorsin, DRE2, PRO0915 | ||
Description: | cytokine induced apoptosis inhibitor 1 [Source:HGNC Symbol;Acc:28050] |
Percent Identity: | 93.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQA-LTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP |
MADFGISAGQFVAVVWDKSSPVEALKGLVD.LQ..LTGNEGR.SVEN..QLLQSAHKESSFDIILSGLVP | |
Retrocopy | MADFGISAGQFVAVVWDKSSPVEALKGLVDELQG<LTGNEGRGSVENMNQLLQSAHKESSFDIILSGLVP |
Parental | GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCS-ALTLSGLVEVKELQREPLTPE |
GSTTLHSAEILAEI..ILRPGGCLFLKEPVETAVDNNSKVKTASKLCS..LTLSGLVEVKELQREPLTPE | |
Retrocopy | GSTTLHSAEILAEITQILRPGGCLFLKEPVETAVDNNSKVKTASKLCS<TLTLSGLVEVKELQREPLTPE |
Parental | EVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDD |
E.QSVREHLGHESD.LLFVQITGKK.NFEVGSS.QLK.SITKKSSPSVKPAVDPAAAKLWTLSANDMEDD | |
Retrocopy | EIQSVREHLGHESDSLLFVQITGKKQNFEVGSSSQLKFSITKKSSPSVKPAVDPAAAKLWTLSANDMEDD |
Parental | SMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCY |
SMDLIDSDELLDPEDLKKPDPASL.AASCGEGKKRKACKNCTCGLA.ELEKEKSREQMSSQPKSACGNCY | |
Retrocopy | SMDLIDSDELLDPEDLKKPDPASLQAASCGEGKKRKACKNCTCGLAKELEKEKSREQMSSQPKSACGNCY |
Parental | LGDAFRCASCPYLGMPAFKPGEKVLLSDSNLHDA |
LGDAFRCASCPYLGMPAFKPGEK.LLS.SNLHDA | |
Retrocopy | LGDAFRCASCPYLGMPAFKPGEKALLSNSNLHDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 22 .98 RPM |
bodymap2_adrenal | 0 .00 RPM | 40 .41 RPM |
bodymap2_brain | 0 .07 RPM | 27 .78 RPM |
bodymap2_breast | 0 .02 RPM | 22 .02 RPM |
bodymap2_colon | 0 .02 RPM | 17 .13 RPM |
bodymap2_heart | 0 .00 RPM | 22 .93 RPM |
bodymap2_kidney | 0 .00 RPM | 39 .35 RPM |
bodymap2_liver | 0 .00 RPM | 20 .98 RPM |
bodymap2_lung | 0 .02 RPM | 16 .95 RPM |
bodymap2_lymph_node | 0 .00 RPM | 21 .69 RPM |
bodymap2_ovary | 0 .06 RPM | 26 .91 RPM |
bodymap2_prostate | 0 .02 RPM | 17 .60 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 22 .70 RPM |
bodymap2_testis | 0 .02 RPM | 100 .47 RPM |
bodymap2_thyroid | 0 .00 RPM | 37 .51 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 30 .65 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_66366 | 236 libraries | 344 libraries | 1168 libraries | 77 libraries | 4 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1258 |
Gorilla gorilla | retro_ggor_1372 |
Pongo abelii | retro_pabe_1556 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012055 | 1 retrocopy | |
Homo sapiens | ENSG00000005194 | 1 retrocopy |
retro_hsap_1875 ,
|
Gorilla gorilla | ENSGGOG00000012402 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020472 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013522 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002876 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007388 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008155 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .09 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .07 RPM |
FIN_HG00377 | 0 .08 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .07 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |