RetrogeneDB ID: | retro_mmul_1719 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:123944085..123945020(-) | ||
Located in intron of: | ENSMMUG00000017311 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CIAPIN1 | ||
Ensembl ID: | ENSMMUG00000020472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQVLTGNEGHVSVENINQLLQSAHKESSFDIILSGLVPR |
MADFGISAGQFVAVV.DKSSPVEALKGLVDKLQVLTGNEG..SVENINQLLQSAHKESSFDIILSGLV.. | |
Retrocopy | MADFGISAGQFVAVVSDKSSPVEALKGLVDKLQVLTGNEGRRSVENINQLLQSAHKESSFDIILSGLVLG |
Parental | STTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEV |
STTLHSAEIL.EIARILRPG.CLFLKE.VETAVDNNSKVKTASKLCSALTLSGL.EVKELQ.EPLTPEEV | |
Retrocopy | STTLHSAEILTEIARILRPGECLFLKESVETAVDNNSKVKTASKLCSALTLSGLMEVKELQWEPLTPEEV |
Parental | QSVREYL-GHESDHLLFVQITGKKPNFEVGSSSQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDS |
.SV.EYL.GHESD.LLFVQITGKK.NFE.GSSSQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDS | |
Retrocopy | LSV*EYL<GHESDCLLFVQITGKKLNFEMGSSSQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDS |
Parental | MDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGLA-ELEKEKSREQMSSQPKSACGNCYL |
MDLIDSDELLDP.DLKKPD.ASL.AASCGEGKKRKACKNCT.GLA.ELEKEK.REQ.SSQPKSAC.NCYL | |
Retrocopy | MDLIDSDELLDPKDLKKPDLASLWAASCGEGKKRKACKNCTWGLAEELEKEKAREQISSQPKSAC*NCYL |
Parental | GDAFRCASCPYLGMPAFKPGEKVLLSDSNLHDA |
.DAF.CASCPYLGMP.FKPGEK.LLSDSNLHDA | |
Retrocopy | DDAFHCASCPYLGMPGFKPGEKMLLSDSNLHDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 26 .22 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 30 .86 RPM |
SRP007412_cerebellum | 0 .52 RPM | 23 .83 RPM |
SRP007412_heart | 0 .29 RPM | 18 .84 RPM |
SRP007412_kidney | 0 .82 RPM | 38 .73 RPM |
SRP007412_liver | 0 .20 RPM | 11 .88 RPM |
SRP007412_testis | 0 .45 RPM | 141 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012055 | 1 retrocopy | |
Homo sapiens | ENSG00000005194 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012402 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020472 | 1 retrocopy |
retro_mmul_1719 ,
|
Monodelphis domestica | ENSMODG00000013522 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002876 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007388 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008155 | 1 retrocopy |