RetrogeneDB ID: | retro_pabe_1260 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:66032488..66032929(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CIAPIN1 | ||
Ensembl ID: | ENSPPYG00000007388 | ||
Aliases: | None | ||
Description: | cytokine induced apoptosis inhibitor 1 [Source:HGNC Symbol;Acc:28050] |
Percent Identity: | 85.03 % |
Parental protein coverage: | 51.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAA |
FEV.SS.QLKLSITKKSSPSVK.A..PAAAKLWTLSANDMEDDSMDLIDS.ELLDPEDLKKPD.ASL.AA | |
Retrocopy | FEVSSSSQLKLSITKKSSPSVKLAGYPAAAKLWTLSANDMEDDSMDLIDSEELLDPEDLKKPDLASLQAA |
Parental | SCGEGKKRKACKNCTCGLAEELEKQKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLS |
.CGEGKKRK.C..CT.GLAEELEK.KSREQMSSQPKSACGNCYLG..F.CA.CPYLG.PAFKPGEKVLLS | |
Retrocopy | PCGEGKKRKTCQSCTRGLAEELEKEKSREQMSSQPKSACGNCYLGNSFCCAGCPYLGIPAFKPGEKVLLS |
Parental | DSNLHDA |
.S.LH.A | |
Retrocopy | NSGLHHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .94 RPM |
SRP007412_heart | 0 .00 RPM | 12 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 27 .74 RPM |
SRP007412_liver | 0 .00 RPM | 17 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012055 | 1 retrocopy | |
Homo sapiens | ENSG00000005194 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012402 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020472 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013522 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002876 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007388 | 2 retrocopies |
retro_pabe_1260 , retro_pabe_1556,
|
Pan troglodytes | ENSPTRG00000008155 | 1 retrocopy |