RetrogeneDB ID: | retro_hsap_2063 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:42989227..42989866(-) | ||
Located in intron of: | ENSG00000213904 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000269374 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZFAND5 | ||
Ensembl ID: | ENSG00000107372 | ||
Aliases: | ZFAND5, ZA20D2, ZFAND5A, ZNF216 | ||
Description: | zinc finger, AN1-type domain 5 [Source:HGNC Symbol;Acc:13008] |
Percent Identity: | 96.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRAD |
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRAD | |
Retrocopy | MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRAD |
Parental | TSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSE |
TSLNNCEGAAGSTSEKSRNVP.AALPVTQQMTEMSIS.EDKITTPKTEV.EPVVTQPSPSV.QPSTSQS. | |
Retrocopy | TSLNNCEGAAGSTSEKSRNVPAAALPVTQQMTEMSISTEDKITTPKTEV*EPVVTQPSPSVFQPSTSQSK |
Parental | EKAPELPKPKKNRCFMCRKKVGLTG-FDCRCGNLFCGLHR-YSDKHNCPYDYKAEAAAKIRKENPVVVAE |
EKAPELPKPKKNRCFMCRKKVGLTG.FDCRCGNLFCGLHR..SDKHNCPYDYKAEAAAKIRKENPVVVAE | |
Retrocopy | EKAPELPKPKKNRCFMCRKKVGLTG<FDCRCGNLFCGLHR>NSDKHNCPYDYKAEAAAKIRKENPVVVAE |
Parental | KIQRI |
KIQRI | |
Retrocopy | KIQRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 1 .19 RPM | 823 .17 RPM |
bodymap2_adrenal | 0 .29 RPM | 217 .59 RPM |
bodymap2_brain | 0 .56 RPM | 417 .54 RPM |
bodymap2_breast | 1 .01 RPM | 247 .73 RPM |
bodymap2_colon | 0 .08 RPM | 311 .62 RPM |
bodymap2_heart | 1 .59 RPM | 320 .52 RPM |
bodymap2_kidney | 0 .25 RPM | 376 .45 RPM |
bodymap2_liver | 0 .84 RPM | 129 .21 RPM |
bodymap2_lung | 1 .41 RPM | 336 .52 RPM |
bodymap2_lymph_node | 0 .55 RPM | 222 .46 RPM |
bodymap2_ovary | 0 .19 RPM | 290 .87 RPM |
bodymap2_prostate | 0 .92 RPM | 371 .48 RPM |
bodymap2_skeletal_muscle | 5 .38 RPM | 1115 .99 RPM |
bodymap2_testis | 1 .66 RPM | 358 .49 RPM |
bodymap2_thyroid | 0 .49 RPM | 453 .23 RPM |
bodymap2_white_blood_cells | 1 .04 RPM | 330 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1375 |
Gorilla gorilla | retro_ggor_1485 |
Pongo abelii | retro_pabe_1676 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002366 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005076 | 2 retrocopies | |
Felis catus | ENSFCAG00000027317 | 1 retrocopy | |
Homo sapiens | ENSG00000086666 | 1 retrocopy | |
Homo sapiens | ENSG00000107372 | 1 retrocopy |
retro_hsap_2063 ,
|
Gorilla gorilla | ENSGGOG00000008957 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007173 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004426 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008951 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024750 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000795 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000007436 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019290 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000700 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .09 RPM |
CEU_NA11843 | 1 .42 RPM |
CEU_NA11930 | 1 .34 RPM |
CEU_NA12004 | 1 .22 RPM |
CEU_NA12400 | 1 .72 RPM |
CEU_NA12751 | 1 .55 RPM |
CEU_NA12760 | 1 .89 RPM |
CEU_NA12827 | 1 .27 RPM |
CEU_NA12872 | 1 .17 RPM |
CEU_NA12873 | 1 .21 RPM |
FIN_HG00183 | 1 .40 RPM |
FIN_HG00277 | 0 .85 RPM |
FIN_HG00315 | 1 .41 RPM |
FIN_HG00321 | 1 .69 RPM |
FIN_HG00328 | 1 .42 RPM |
FIN_HG00338 | 1 .13 RPM |
FIN_HG00349 | 1 .68 RPM |
FIN_HG00375 | 1 .49 RPM |
FIN_HG00377 | 1 .21 RPM |
FIN_HG00378 | 1 .81 RPM |
GBR_HG00099 | 1 .13 RPM |
GBR_HG00111 | 1 .25 RPM |
GBR_HG00114 | 1 .68 RPM |
GBR_HG00119 | 0 .96 RPM |
GBR_HG00131 | 2 .13 RPM |
GBR_HG00133 | 1 .71 RPM |
GBR_HG00134 | 1 .88 RPM |
GBR_HG00137 | 1 .65 RPM |
GBR_HG00142 | 1 .36 RPM |
GBR_HG00143 | 1 .53 RPM |
TSI_NA20512 | 1 .07 RPM |
TSI_NA20513 | 0 .85 RPM |
TSI_NA20518 | 1 .75 RPM |
TSI_NA20532 | 1 .60 RPM |
TSI_NA20538 | 2 .12 RPM |
TSI_NA20756 | 1 .48 RPM |
TSI_NA20765 | 1 .68 RPM |
TSI_NA20771 | 1 .65 RPM |
TSI_NA20786 | 1 .54 RPM |
TSI_NA20798 | 1 .18 RPM |
YRI_NA18870 | 1 .96 RPM |
YRI_NA18907 | 1 .14 RPM |
YRI_NA18916 | 1 .66 RPM |
YRI_NA19093 | 1 .41 RPM |
YRI_NA19099 | 1 .44 RPM |
YRI_NA19114 | 1 .39 RPM |
YRI_NA19118 | 0 .81 RPM |
YRI_NA19213 | 1 .17 RPM |
YRI_NA19214 | 1 .92 RPM |
YRI_NA19223 | 1 .63 RPM |