RetrogeneDB ID: retro_mputfur_143

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896899.1:455874..456501(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000020107
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ZFAND5
• Ensembl ID: ENSMPUG00000008951
• Aliases: None
• Description: zinc finger, AN1-type domain 5 [Source:HGNC Symbol;Acc:13008]

Sequence

>retro_mputfur_143
ATGGCTCAAGAAACTAATCACAGCCAAGTGCCTATGCTTTGTTCCACTGGCTGCGGATTTTATGGAAACCCTCGTACAAA
TGGCATGTGTTCAGTGTGCTATAAAGAACATCTTCAAAGACAGAATAGTAGTAATGGTAGAATAAGCCCACCTGCAGCCT
CCGTCAGTAGCCTTTCGGAGTCTCTCCCTGTCCAGTGCGTGGACGGTGGTGGCCCCGACGTTCAGTGCCCGCTGGACTCT
GCATGTGCGTCCGTGCAGCCAAGCCCTGTATCAAATCAGTCACTTTTATCAGAATCTGTAGCATCTTCCCAAGTGGACAG
TACATCTGTGGACAAAGCAGTACCTGACCCAGAAGACCTGCAAGCTTCAGTATCAGATACGGCACAGCAGCCGTCTGAAG
AGCAAAGCAAGTCTCTTGAAAAACCAAAACAAAAAAAGAATCGCTGTTTCATGTGCAGGAAGAAGGTGGGACTTACTGGG
TTTGAATGCCGGTGTGGAAATGTTTACTGTGGTGTACACCGTTACTCCGATGTACACAATTGCTCTTACAATTACAAAGC
TGATGCTGCTGAGAAAATCAGAAAAGAAAATCCAGTAGTTGTTGGTGAAAAGATCCAGAAGATTTGA

Alignment

ORF - retro_mputfur_143 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.5 %
• Parental protein coverage: 55.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PVTQQ--MTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQGEEKAPELPKPKKNRCFMCRKKVGL
          PV..Q....E...S.....T.....V..P...Q.S.S......S....K..E.PK.KKNRCFMCRKKVGL
Retrocopy PVSNQSLLSESVASSQVDSTSVDKAVPDPEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGL

Parental  TGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
          TGF.CRCGN..CG.HRYSD.HNC.Y.YKA.AA.KIRKENPVVV.EKIQ.I
Retrocopy TGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_143 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_143 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002366	2 retrocopies	retro_chof_1050, retro_chof_1846,
Cavia porcellus	ENSCPOG00000005076	2 retrocopies	retro_cpor_1398, retro_cpor_774,
Felis catus	ENSFCAG00000027317	1 retrocopy	retro_fcat_641,
Homo sapiens	ENSG00000107372	1 retrocopy	retro_hsap_2063,
Gorilla gorilla	ENSGGOG00000008957	1 retrocopy	retro_ggor_1485,
Myotis lucifugus	ENSMLUG00000007173	2 retrocopies	retro_mluc_1233, retro_mluc_1993,
Monodelphis domestica	ENSMODG00000004426	1 retrocopy	retro_mdom_1910,
Mustela putorius furo	ENSMPUG00000008951	1 retrocopy	retro_mputfur_143 ,
Mus musculus	ENSMUSG00000024750	1 retrocopy	retro_mmus_1176,
Oryctolagus cuniculus	ENSOCUG00000000795	1 retrocopy	retro_ocun_1546,
Procavia capensis	ENSPCAG00000007436	1 retrocopy	retro_pcap_112,
Pongo abelii	ENSPPYG00000019290	1 retrocopy	retro_pabe_1676,
Vicugna pacos	ENSVPAG00000000700	1 retrocopy	retro_vpac_23,