RetrogeneDB ID: | retro_hsap_2279 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:74981796..74981946(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224646 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS28 | ||
Ensembl ID: | ENSG00000233927 | ||
Aliases: | None | ||
Description: | ribosomal protein S28 [Source:HGNC Symbol;Acc:10418] |
Percent Identity: | 94. % |
Parental protein coverage: | 72.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPV |
M.TSRVQPIKLARVTKVLGRTGSQGQCTQVRV.FMD.TSRSIIRNVKGPV | |
Retrocopy | MNTSRVQPIKLARVTKVLGRTGSQGQCTQVRVKFMDVTSRSIIRNVKGPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 59 .97 RPM |
bodymap2_adrenal | 0 .10 RPM | 157 .29 RPM |
bodymap2_brain | 0 .00 RPM | 21 .10 RPM |
bodymap2_breast | 0 .29 RPM | 44 .71 RPM |
bodymap2_colon | 0 .00 RPM | 136 .61 RPM |
bodymap2_heart | 0 .00 RPM | 24 .70 RPM |
bodymap2_kidney | 0 .00 RPM | 27 .38 RPM |
bodymap2_liver | 0 .00 RPM | 40 .01 RPM |
bodymap2_lung | 0 .00 RPM | 87 .59 RPM |
bodymap2_lymph_node | 0 .00 RPM | 144 .33 RPM |
bodymap2_ovary | 0 .37 RPM | 60 .16 RPM |
bodymap2_prostate | 0 .00 RPM | 99 .05 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 61 .27 RPM |
bodymap2_testis | 0 .09 RPM | 41 .76 RPM |
bodymap2_thyroid | 0 .06 RPM | 40 .73 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 193 .16 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_125349 | 686 libraries | 818 libraries | 313 libraries | 10 libraries | 2 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1613 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000233927 | 9 retrocopies |
retro_hsap_1192, retro_hsap_1352, retro_hsap_1725, retro_hsap_2220, retro_hsap_2279 , retro_hsap_3748, retro_hsap_505, retro_hsap_523, retro_hsap_799,
|
Loxodonta africana | ENSLAFG00000029923 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000028895 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003890 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067288 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000040141 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000042886 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |