RetrogeneDB ID: | retro_mmus_3283 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:62052787..62052988(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps28 | ||
Ensembl ID: | ENSMUSG00000067288 | ||
Aliases: | None | ||
Description: | ribosomal protein S28 [Source:MGI Symbol;Acc:MGI:1859516] |
Percent Identity: | 50.75 % |
Parental protein coverage: | 97.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARR |
M..S..Q...LARV.KV.G.T..........V....DTS.S.I...KGP..EGDVLTLL.SEREA.R | |
Retrocopy | MNKSHIQTTMLARVSKVPGWTSGLWDSAHRCVWNLSDTSGSNICSMKGPMLEGDVLTLLGSEREAWR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 22 .83 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .76 RPM |
SRP007412_heart | 0 .00 RPM | 36 .02 RPM |
SRP007412_kidney | 0 .00 RPM | 40 .14 RPM |
SRP007412_liver | 0 .00 RPM | 35 .45 RPM |
SRP007412_testis | 0 .00 RPM | 44 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004917 | 1 retrocopy | |
Bos taurus | ENSBTAG00000002468 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000022876 | 5 retrocopies | |
Equus caballus | ENSECAG00000017256 | 1 retrocopy | |
Felis catus | ENSFCAG00000024931 | 3 retrocopies | |
Homo sapiens | ENSG00000233927 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000029923 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000023621 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000028895 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003890 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067288 | 3 retrocopies |
retro_mmus_2949, retro_mmus_3283 , retro_mmus_91,
|
Oryctolagus cuniculus | ENSOCUG00000021484 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000040141 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000042886 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000013597 | 3 retrocopies |