Parental gene:

CHMP4B, ENSG00000101421

Aliases:CHMP4B, C20orf178, CHMP4A, CTPP3, CTRCT31, SNF7, SNF7-2, Shax1, VPS32B, Vps32-2, dJ553F4.4
Description:charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171]
Organism:Human (Homo sapiens)
Coordinates:20:32399109..32442172(+)


>ENSG00000101421
ATGTCGGTGTTCGGGAAGCTGTTCGGGGCTGGAGGGGGTAAGGCCGGCAAGGGCGGCCCGACCCCCCAGGAGGCCATCCA
GCGGCTGCGGGACACGGAAGAGATGTTAAGCAAGAAACAGGAGTTCCTGGAGAAGAAAATCGAGCAGGAGCTGACGGCCG
CCAAGAAGCACGGCACCAAAAACAAGCGCGCGGCCCTCCAGGCACTGAAGCGTAAGAAGAGGTATGAGAAGCAGCTGGCG
CAGATCGACGGCACATTATCAACCATCGAGTTCCAGCGGGAGGCCCTGGAGAATGCCAACACCAACACCGAGGTGCTCAA
GAACATGGGCTATGCCGCCAAGGCCATGAAGGCGGCCCATGACAACATGGACATCGATAAAGTTGATGAGTTAATGCAGG
ACATTGCTGACCAGCAAGAACTTGCAGAGGAGATTTCAACAGCAATTTCGAAACCTGTAGGGTTTGGAGAAGAGTTTGAC
GAGGATGAGCTCATGGCGGAATTAGAAGAACTAGAACAGGAGGAACTAGACAAGAATTTGCTGGAAATCAGTGGACCCGA
AACAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAAAACCCGCCAAGAAGAAAGAAGAGGAGGACGACGACA
TGAAGGAATTGGAGAACTGGGCTGGATCCATGTAA

Library Parental gene expression (RPM)
bodymap2_liver 34 .62 RPM
bodymap2_lung 160 .99 RPM
bodymap2_breast 78 .15 RPM
bodymap2_adipose 119 .74 RPM
bodymap2_adrenal 100 .12 RPM
bodymap2_skeletal_muscle 98 .29 RPM
bodymap2_thyroid 142 .68 RPM
bodymap2_prostate 188 .48 RPM
bodymap2_colon 178 .57 RPM
bodymap2_testis 99 .62 RPM
bodymap2_brain 123 .60 RPM
bodymap2_heart 63 .89 RPM
bodymap2_white_blood_cells 122 .12 RPM
bodymap2_lymph_node 76 .20 RPM
bodymap2_ovary 118 .49 RPM
bodymap2_kidney 80 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009038 ortholog_one2one 1 retrogene
retro_amel_1612,
Canis familiaris ENSCAFG00000007478 ortholog_one2one 1 retrogene
retro_cfam_1304,
Choloepus hoffmanni ENSCHOG00000007288 ortholog_one2one 1 retrogene
retro_chof_2518,
Equus caballus ENSECAG00000008311 ortholog_one2one 1 retrogene
retro_ecab_496,
Felis catus ENSFCAG00000025893 ortholog_one2one 1 retrogene
retro_fcat_1835,
Homo sapiens ENSG00000254505 within_species_paralog 1 retrogene
retro_hsap_2284,
Gorilla gorilla ENSGGOG00000007775 ortholog_one2one 1 retrogene
retro_ggor_29,
Macaca mulatta ENSMMUG00000008084 ortholog_one2one 1 retrogene
retro_mmul_2178,
Mustela putorius furo ENSMPUG00000017821 ortholog_one2one 2 retrogenes
retro_mputfur_1302, retro_mputfur_697,
Nomascus leucogenys ENSNLEG00000010020 ortholog_one2one 1 retrogene
retro_nleu_1822,
Pongo abelii ENSPPYG00000010931 ortholog_one2one 1 retrogene
retro_pabe_1111,
Pan troglodytes ENSPTRG00000013408 ortholog_one2one 1 retrogene
retro_ptro_915,
Pteropus vampyrus ENSPVAG00000010293 ortholog_one2one 1 retrogene
retro_pvam_973,
Rattus norvegicus ENSRNOG00000046585 possible_ortholog 1 retrogene
retro_rnor_61,
Tarsius syrichta ENSTSYG00000013212 ortholog_one2one 1 retrogene
retro_tsyr_1453,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1339 77.14 92.86
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Download FASTA sequences of all ENSG00000101421 retrocopies