RetrogeneDB ID: | retro_hsap_2572 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:21495915..21496521(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224688 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | E2F6 | ||
Ensembl ID: | ENSG00000169016 | ||
Aliases: | E2F6, E2F-6 | ||
Description: | E2F transcription factor 6 [Source:HGNC Symbol;Acc:3120] |
Percent Identity: | 97.03 % |
Parental protein coverage: | 71.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQEELSD |
.SAPGGILDLNKVATKLGVRKRRVYDIT.VLDGIDLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQEEL.D | |
Retrocopy | KSAPGGILDLNKVATKLGVRKRRVYDITDVLDGIDLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQEELAD |
Parental | LSAMEDALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDS |
L.AMEDALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDS | |
Retrocopy | LPAMEDALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDS |
Parental | ITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVSN |
ITVHIRSTNGPIDVYL.EVEQGQTSNKRSEGV.TSSSESTHPEGPEEEENPQQSEELLEVSN | |
Retrocopy | ITVHIRSTNGPIDVYL*EVEQGQTSNKRSEGVRTSSSESTHPEGPEEEENPQQSEELLEVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 9 .86 RPM |
bodymap2_adrenal | 0 .00 RPM | 12 .65 RPM |
bodymap2_brain | 0 .00 RPM | 11 .88 RPM |
bodymap2_breast | 0 .00 RPM | 10 .29 RPM |
bodymap2_colon | 0 .00 RPM | 8 .64 RPM |
bodymap2_heart | 0 .00 RPM | 17 .89 RPM |
bodymap2_kidney | 0 .00 RPM | 10 .57 RPM |
bodymap2_liver | 0 .00 RPM | 6 .40 RPM |
bodymap2_lung | 0 .00 RPM | 8 .90 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .60 RPM |
bodymap2_ovary | 0 .00 RPM | 18 .51 RPM |
bodymap2_prostate | 0 .00 RPM | 11 .57 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 15 .75 RPM |
bodymap2_testis | 0 .00 RPM | 19 .66 RPM |
bodymap2_thyroid | 0 .00 RPM | 19 .30 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 8 .78 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BE814395 | 21496054 | 21496307 | 100 | 253 | 0 | 253 |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2547 |
Homo sapiens | retro_hsap_2542 |
Pan troglodytes | retro_ptro_1484 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000048286 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006910 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000258 | 1 retrocopy | |
Homo sapiens | ENSG00000112242 | 1 retrocopy | |
Homo sapiens | ENSG00000169016 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000007957 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000003384 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023225 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014134 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012646 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011661 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003316 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |