RetrogeneDB ID: | retro_meug_893 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold22177:5378..5849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | E2F6 | ||
Ensembl ID: | ENSMEUG00000007957 | ||
Aliases: | None | ||
Description: | E2F transcription factor 6 [Source:HGNC Symbol;Acc:3120] |
Percent Identity: | 76.69 % |
Parental protein coverage: | 79.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RVAKPRYD-VSLVYLTRKFMELIKSAPGGVLDLNEVATTLGVRKRRVYDITNVLDGIDLIQK-RSKNHIQ |
RVAKP....VSL.YLT.KFMELIK.A.GG.LDLNE.ATTLGV.K..VYDI...LD.ID.IQK..SKNHIQ | |
Retrocopy | RVAKPHLG>VSLFYLTCKFMELIKFASGGDLDLNEDATTLGVQKGSVYDIISALDEIDIIQK<NSKNHIQ |
Parental | WIGSDLGGIGSKVPHQKKIRDELNDLTAMEKALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAF |
WIGSDL..I.SKVP.QKKIR.EL.DLT.MEKALDELIKD.AQQLF.L....ENE.LAY.TYQDIHSIQ.F | |
Retrocopy | WIGSDLD-I*SKVPQQKKIRNELTDLTVMEKALDELIKDYAQQLFKLI---ENEGLAYMTYQDIHSIQVF |
Parental | HEQIVIAVKAPEETKLEVPAPKE |
HEQIVIAVKAPEETKLEVP.PK. | |
Retrocopy | HEQIVIAVKAPEETKLEVPTPKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000048286 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005114 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000006910 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000258 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013213 | 1 retrocopy | |
Homo sapiens | ENSG00000169016 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000007957 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000003384 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023225 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014134 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013601 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012646 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011661 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003316 | 1 retrocopy |