>retro_hsap_2631
ACAGAAACAGCCCAGTGTGGCCAGGGTGCAAAACCTCAAGTTCAAGTGAAGAGGAAGCTGAAAACTGGAATATTAATGCT
AAACATGGGAGGACCTGAAACCCTCTGACACGTTCATGACTTCCTTCTGAGGCTCTTTTTGGACCAAGACCTCATGACAC
TTACTGTTCAAAATAAGTTTACACCATTCTTTGCCAAATGCAGAACCTCCAAGATTCAAGGGCAGTACCACAGAACAGGA
GGTGGGTCCTCCATCAAGATGTGGATTTCCAAGCAGGGAGAAGGTATTATGGTGAAGCTGCTGGATGACTTGTCCCCCTA
CACAGCCCCTCACAAATAATACTTCATTGGATTTTGGCATGTCCATTCTTTACTAAAAGAAGCAAATGAAGAGATGGAGA
GAGATGGCCTGGAAAGGGCTATTGCTTTCATGCAGGATCCACAGTATGCTTGCTGTACCACAGGCGGCAGCTTAAATGCC
ATTTAAAGATCCTATAATAGAGTGGGACAGAAGTTTACAATGAAGTGCAGCACTATCAGTAGGTGGCCCACCCATTGCCT
CCTCACCCACTGCTTTGTTGACTACATTCTGAAAGAGCTGGACCATTTTCCACTGGAGAAGAGAAGCGAGTCGGCCATTC
TCTTTTCTGCTCACTCACTGCCAATATCCGTGATCAACAGAGGAGACCCCTATTCTCAGGAGTTAAGTGCCACTATCCAA
AAAGTCATAGAAAGGTTGGGTTACTGCAACCCTTACCAGCTGGTGTGAGGATCCAAGGTTGGTTCAGTGCCCTGGATGGG
TCTTCAAACAGATGAAATCTATCAGAGGGCTTTCTGAGAGGGGAAAGAAGAATATCCTCTCACTTTTGATAGCATTTACC
AACGATAACACCGAAATGCTGTAGAAACTGGATATCGAGTACGCTCAAGTTTTAGACAATGAGTGTGGAGTTGAAAACAT
CAGAAGAGCAGCCTCT
ORF - retro_hsap_2631 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.92 % |
Parental protein coverage: |
76.6 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | TETAQHAQGAKPQVQPQKRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRT |
| TETAQ..QGAKPQVQ..KRK.KTGILMLNMGGPETL..VHDFLLRLFLD.DLMTL..QNK..PF.AK.RT |
Retrocopy | TETAQCGQGAKPQVQV-KRKLKTGILMLNMGGPETL*HVHDFLLRLFLDQDLMTLTVQNKFTPFFAKCRT |
|
Parental | PKIQEQYRRIGGGSPIKIWTSKQGEG-MVKLLDELSPNTAPHK-YYIGFRYVHPLTEEAIEEMERDGLER |
| .KIQ.QY.R.GGGS.IK.W.SKQGEG.MVKLLD.LSP.TAPHK.Y.IGF..VH.L..EA.EEMERDGLER |
Retrocopy | SKIQGQYHRTGGGSSIKMWISKQGEGIMVKLLDDLSPYTAPHK*YFIGFWHVHSLLKEANEEMERDGLER |
|
Parental | AIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRS |
| AIAF.Q.PQY.C.TTG.SLNAI.R.YN.VG.K.TMK.STI.RWPTH.LL..CF.D.ILKELDHFPLEKRS |
Retrocopy | AIAFMQDPQYACCTTGGSLNAI*RSYNRVGQKFTMKCSTISRWPTHCLLTHCFVDYILKELDHFPLEKRS |
|
Parental | EVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDE-SIKGLC |
| E..ILFSAHSLP.SV.NRGDPY.QE.SAT.QKV.ERL.YCNPY.LV..SKVG..PW.G.QTDE.SI.GL. |
Retrocopy | ESAILFSAHSLPISVINRGDPYSQELSATIQKVIERLGYCNPYQLV*GSKVGSVPWMGLQTDE>SIRGLS |
|
Parental | ERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAES |
| ERG.KNIL...IAFT.D..E.L..LDIEY.QVL..ECGVENIRRA.S |
Retrocopy | ERGKKNILSLLIAFTNDNTEML*KLDIEYAQVLDNECGVENIRRAAS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
bodymap2_adipose |
0 .00 RPM |
18 .76 RPM |
bodymap2_adrenal |
0 .00 RPM |
23 .03 RPM |
bodymap2_brain |
0 .00 RPM |
31 .18 RPM |
bodymap2_breast |
0 .00 RPM |
25 .95 RPM |
bodymap2_colon |
0 .00 RPM |
13 .42 RPM |
bodymap2_heart |
0 .00 RPM |
25 .79 RPM |
bodymap2_kidney |
0 .00 RPM |
53 .03 RPM |
bodymap2_liver |
0 .00 RPM |
32 .80 RPM |
bodymap2_lung |
0 .00 RPM |
20 .29 RPM |
bodymap2_lymph_node |
0 .00 RPM |
9 .17 RPM |
bodymap2_ovary |
0 .00 RPM |
28 .36 RPM |
bodymap2_prostate |
0 .00 RPM |
29 .06 RPM |
bodymap2_skeletal_muscle |
0 .00 RPM |
23 .99 RPM |
bodymap2_testis |
0 .00 RPM |
19 .21 RPM |
bodymap2_thyroid |
0 .00 RPM |
51 .01 RPM |
bodymap2_white_blood_cells |
0 .00 RPM |
23 .84 RPM |
RNA Polymerase II actvity near the 5' end of retro_hsap_2631 was not detected
No EST(s) were mapped for retro_hsap_2631 retrocopy.
No TSS is located nearby retro_hsap_2631 retrocopy 5' end.
retro_hsap_2631 was not experimentally validated.
Retrocopy orthology:
Retrocopy
retro_hsap_2631 has 4 orthologous retrocopies within
eutheria group
.
Parental genes homology:
Parental genes homology involve
8 parental genes, and
8 retrocopies.
Expression level across human populations :
Library |
Retrogene expression |
CEU_NA11831 |
0 .00 RPM |
CEU_NA11843 |
0 .00 RPM |
CEU_NA11930 |
0 .00 RPM |
CEU_NA12004 |
0 .00 RPM |
CEU_NA12400 |
0 .00 RPM |
CEU_NA12751 |
0 .00 RPM |
CEU_NA12760 |
0 .00 RPM |
CEU_NA12827 |
0 .00 RPM |
CEU_NA12872 |
0 .00 RPM |
CEU_NA12873 |
0 .00 RPM |
FIN_HG00183 |
0 .00 RPM |
FIN_HG00277 |
0 .00 RPM |
FIN_HG00315 |
0 .00 RPM |
FIN_HG00321 |
0 .00 RPM |
FIN_HG00328 |
0 .00 RPM |
FIN_HG00338 |
0 .02 RPM |
FIN_HG00349 |
0 .00 RPM |
FIN_HG00375 |
0 .00 RPM |
FIN_HG00377 |
0 .00 RPM |
FIN_HG00378 |
0 .00 RPM |
GBR_HG00099 |
0 .00 RPM |
GBR_HG00111 |
0 .00 RPM |
GBR_HG00114 |
0 .00 RPM |
GBR_HG00119 |
0 .00 RPM |
GBR_HG00131 |
0 .00 RPM |
GBR_HG00133 |
0 .00 RPM |
GBR_HG00134 |
0 .00 RPM |
GBR_HG00137 |
0 .00 RPM |
GBR_HG00142 |
0 .00 RPM |
GBR_HG00143 |
0 .00 RPM |
TSI_NA20512 |
0 .00 RPM |
TSI_NA20513 |
0 .00 RPM |
TSI_NA20518 |
0 .00 RPM |
TSI_NA20532 |
0 .00 RPM |
TSI_NA20538 |
0 .00 RPM |
TSI_NA20756 |
0 .00 RPM |
TSI_NA20765 |
0 .02 RPM |
TSI_NA20771 |
0 .00 RPM |
TSI_NA20786 |
0 .00 RPM |
TSI_NA20798 |
0 .00 RPM |
YRI_NA18870 |
0 .00 RPM |
YRI_NA18907 |
0 .00 RPM |
YRI_NA18916 |
0 .00 RPM |
YRI_NA19093 |
0 .00 RPM |
YRI_NA19099 |
0 .00 RPM |
YRI_NA19114 |
0 .00 RPM |
YRI_NA19118 |
0 .00 RPM |
YRI_NA19213 |
0 .00 RPM |
YRI_NA19214 |
0 .00 RPM |
YRI_NA19223 |
0 .00 RPM |
Indel association:
No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (
PubMed).