RetrogeneDB ID: | retro_mmul_1485 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:177312316..177313290(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FECH | ||
Ensembl ID: | ENSMMUG00000022568 | ||
Aliases: | None | ||
Description: | Ferrochelatase [Source:UniProtKB/TrEMBL;Acc:F6ZKY9] |
Percent Identity: | 70.78 % |
Parental protein coverage: | 76.92 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | AAATETAQHAQHAKPQVQPQKRYESNIRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKL |
...TETAQ..Q.AK....PQ...E...RK.KT.ILMLNMGGPETLG.VHDFLLRLFLD.DLMTL..QNK. | |
Retrocopy | SGVTETAQRGQGAK----PQVQVEK--RKLKTEILMLNMGGPETLGHVHDFLLRLFLDQDLMTLTVQNKF |
Parental | APFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEM |
.PF..KRRT.KIQ.QY.RIGGG.PIK.W.SKQG.GMVKLLD.LSP.TAPHKY.IGF...H.L...A.EEM | |
Retrocopy | TPFFSKRRTSKIQGQYHRIGGGFPIKMWISKQGKGMVKLLDDLSPHTAPHKYFIGFWHFHSLPK*ANEEM |
Parental | ERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDH |
ERD.LERAIAF.Q.PQYSC.TTGSSLNAI.R..N.VG.K.TMKWSTI.RWPTH.LL..CFADHILKELDH | |
Retrocopy | ERDDLERAIAFMQHPQYSCCTTGSSLNAI*RSDNRVGQKLTMKWSTIGRWPTHRLLTHCFADHILKELDH |
Parental | FPLEKRSEVVILFSAH-SLPMSVVNRGDPYPQEVSATVQNVMERLGYCNPYRLVWQSKVGPMPWLGPQTD |
FPLEKRSE..ILFS.H..LP.SV.NRGDPY..E...T.Q.V.ERLGYCNPY.LV..SKVG.MPWL..Q.D | |
Retrocopy | FPLEKRSELAILFSVH>FLPISVFNRGDPYS*ELCTTIQRVIERLGYCNPYQLV*ESKVGSMPWLDLQRD |
Parental | -ESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRR |
..SI.GL.ERG.KNIL.V.IAFT.D....L..LDIEYSQVL..ECGVENIR. | |
Retrocopy | >KSIRGLSERGKKNILSVFIAFTNDNTKML*KLDIEYSQVLDHECGVENIRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .33 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .10 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .27 RPM |
SRP007412_heart | 0 .00 RPM | 17 .02 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .17 RPM |
SRP007412_liver | 0 .00 RPM | 27 .27 RPM |
SRP007412_testis | 0 .00 RPM | 7 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2631 |
Pan troglodytes | retro_ptro_1776 |
Gorilla gorilla | retro_ggor_1841 |
Pongo abelii | retro_pabe_2332 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003873 | 1 retrocopy | |
Homo sapiens | ENSG00000066926 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005554 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022568 | 1 retrocopy |
retro_mmul_1485 ,
|
Nomascus leucogenys | ENSNLEG00000008062 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009182 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010045 | 1 retrocopy |