RetrogeneDB ID: | retro_hsap_2689 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:114997971..114998704(+) | ||
Located in intron of: | ENSG00000242880 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000244157 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E2 | ||
Ensembl ID: | ENSG00000135930 | ||
Aliases: | EIF4E2, 4E-LP, 4EHP, EIF4EL3, IF4e | ||
Description: | eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293] |
Percent Identity: | 83.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPG |
MNNKFDALKDD...DHDQNEE.STQKD.EKEKT..DKN.SS.KRKAVVPG.AEHPLQYNYTFWYSRRTP. | |
Retrocopy | MNNKFDALKDDNNRDHDQNEESSTQKDTEKEKTQWDKNKSSNKRKAVVPGQAEHPLQYNYTFWYSRRTPV |
Parental | RPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFK-EGIKPMWEDDANKNGGKWIIRL |
.PTSSQSYEQNIKQIGTFASVEQFWRFYSHMV.P.DLTGHSDF.LFK..GIKPMWED.ANKNG.K.II.L | |
Retrocopy | CPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVCPKDLTGHSDFDLFK<KGIKPMWEDNANKNGDKRIIWL |
Parental | RKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIW-NKTASDQATTARIRDTLRRVLNLPP |
RKGL.S.CWENLILAMLGE.FMVGEEICGAVVS...QEDIISIW..KTASDQATT..I.DTL.RVLNL.P | |
Retrocopy | RKGLISHCWENLILAMLGEKFMVGEEICGAVVSLHCQEDIISIW<EKTASDQATTT*IWDTLWRVLNLSP |
Parental | NTIMEYKTHTDSIKMPGRLGPQRLLFQNLWKPRLNVP |
NTIM.YKTHTDSIK.PG.LG.QRLL.QNLWK.RLNVP | |
Retrocopy | NTIMKYKTHTDSIKTPGSLGSQRLLYQNLWKLRLNVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 38 .64 RPM |
bodymap2_adrenal | 0 .08 RPM | 46 .73 RPM |
bodymap2_brain | 0 .05 RPM | 43 .86 RPM |
bodymap2_breast | 0 .00 RPM | 48 .76 RPM |
bodymap2_colon | 0 .00 RPM | 46 .75 RPM |
bodymap2_heart | 0 .00 RPM | 29 .06 RPM |
bodymap2_kidney | 0 .00 RPM | 67 .00 RPM |
bodymap2_liver | 0 .00 RPM | 39 .06 RPM |
bodymap2_lung | 0 .00 RPM | 29 .36 RPM |
bodymap2_lymph_node | 0 .00 RPM | 45 .68 RPM |
bodymap2_ovary | 0 .00 RPM | 56 .96 RPM |
bodymap2_prostate | 0 .00 RPM | 43 .27 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 35 .90 RPM |
bodymap2_testis | 0 .00 RPM | 60 .48 RPM |
bodymap2_thyroid | 0 .00 RPM | 53 .18 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 98 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1816 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011328 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013786 | 2 retrocopies | |
Equus caballus | ENSECAG00000020187 | 2 retrocopies | |
Homo sapiens | ENSG00000135930 | 1 retrocopy |
retro_hsap_2689 ,
|
Homo sapiens | ENSG00000151247 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015082 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011269 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013043 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013108 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004455 | 11 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |