Parental gene:

EIF4E2, ENSCJAG00000013786

Aliases:None
Description:eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:148971841..148988893(+)


>ENSCJAG00000013786
AGAAGCGGCAAAGTGGATAGTAGTTTGAAAGATGATGACAGTGGGGACCATGACCAGAATGAAGAAAACAGCACACCGAA
AGATGGTGAGAAGGAAAAAACAGAGCGAGATAAGAGTCAGAGCAGCAGCAAGAGAAAGGCTGTTGTCCCTGGACCGGCAG
AGCACCCCCTGCAGTACAACTACACTTTCTGGTACTCCAGGAGAACCCCCGGCCGTCCCACCAGCTCACAGAGCTATGAA
CAGAATATCAAACAGATTGGCACCTTTGCTTCTGTGGAGCAGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGAGA
CCTGACAGGCCACAGTGACTTCCATCTCTTCAAGGAAGGAATTAAACCCATGTGGGAGGATGATGCAAATAAAAATGGCG
GCAAGTGGATTATTCGGCTGCGGAAGGGCTTGGCCTCCCGTTGCTGGGAGAATCTCATTTTGGCCATGTTGGGGGAACAG
TTCATGGTTGGGGAGGAGATCTGTGGGGCTGTGGTGTCTGTCCGCTTTCAGGAGGACATTATTTCAATATGGAATAAGAC
TGCCAGCGACCAGGCAACCACAGCCCGAATCCGGGACACGCTTCGGCGAGTGCTTAACCTACCTCCCAACACCATTATGG
AGTACAAAACCCACACCGACAGCATCAAAATGCCAGGCAGGCTGGGCCCCCAAAGGCTCCTTTTTCAAAACCTCTGGAAG
CCGCGGTTGAATGTGCCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .46 RPM
SRP051959_skeletal_muscle 7 .49 RPM
SRP051959_lymph_node 10 .55 RPM
SRP051959_lung 8 .67 RPM
SRP051959_liver 9 .38 RPM
SRP051959_kidney 8 .54 RPM
SRP051959_heart 6 .14 RPM
SRP051959_colon 10 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010598 possible_ortholog 2 retrogenes
retro_btau_1232, retro_btau_1498,
Canis familiaris ENSCAFG00000011328 possible_ortholog 1 retrogene
retro_cfam_183,
Choloepus hoffmanni ENSCHOG00000013109 possible_ortholog 3 retrogenes
retro_chof_1963, retro_chof_369, retro_chof_567,
Callithrix jacchus ENSCJAG00000007151 within_species_paralog 2 retrogenes
retro_cjac_1373, retro_cjac_2097,
Dasypus novemcinctus ENSDNOG00000016877 possible_ortholog 1 retrogene
retro_dnov_1374,
Equus caballus ENSECAG00000020187 ortholog_one2one 2 retrogenes
retro_ecab_300, retro_ecab_847,
Echinops telfairi ENSETEG00000007930 possible_ortholog 1 retrogene
retro_etel_1385,
Homo sapiens ENSG00000135930 ortholog_one2one 1 retrogene
retro_hsap_2689,
Macropus eugenii ENSMEUG00000015519 possible_ortholog 2 retrogenes
retro_meug_445, retro_meug_644,
Microcebus murinus ENSMICG00000015082 possible_ortholog 2 retrogenes
retro_mmur_806, retro_mmur_975,
Myotis lucifugus ENSMLUG00000011269 possible_ortholog 1 retrogene
retro_mluc_60,
Monodelphis domestica ENSMODG00000002680 possible_ortholog 1 retrogene
retro_mdom_1717,
Otolemur garnettii ENSOGAG00000009155 possible_ortholog 1 retrogene
retro_ogar_104,
Pan troglodytes ENSPTRG00000013043 ortholog_one2one 1 retrogene
retro_ptro_1816,
Pteropus vampyrus ENSPVAG00000007494 possible_ortholog 4 retrogenes
retro_pvam_1147, retro_pvam_340, retro_pvam_541, retro_pvam_720,
Sarcophilus harrisii ENSSHAG00000013108 ortholog_one2many 1 retrogene
retro_shar_101,
Ictidomys tridecemlineatus ENSSTOG00000003508 possible_ortholog 3 retrogenes
retro_itri_1270, retro_itri_1370, retro_itri_573,
Tupaia belangeri ENSTBEG00000004455 ortholog_one2one 11 retrogenes
retro_tbel_1299, retro_tbel_2197, retro_tbel_2623, retro_tbel_2680, retro_tbel_3932, retro_tbel_4471, retro_tbel_4622, retro_tbel_536, retro_tbel_616, retro_tbel_650, retro_tbel_714,
Tursiops truncatus ENSTTRG00000010927 possible_ortholog 2 retrogenes
retro_ttru_1799, retro_ttru_1920,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1061 86.18 100.00
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2. retro_cjac_2717 95.53 100.00
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Download FASTA sequences of all ENSCJAG00000013786 retrocopies