RetrogeneDB ID: | retro_hsap_3152 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:24170479..24171151(+) | ||
Located in intron of: | ENSG00000248874 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226432 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKTIP | ||
Ensembl ID: | ENSG00000166971 | ||
Aliases: | AKTIP, FT1, FTS | ||
Description: | AKT interacting protein [Source:HGNC Symbol;Acc:16710] |
Percent Identity: | 98.66 % |
Parental protein coverage: | 76.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MNPFWSMSTSSVRKRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAAQSTNGTHASY |
MNPFWSMSTSSV.KRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAAQSTNGTHASY | |
Retrocopy | MNPFWSMSTSSVHKRSEGEEKTLTGDVKTSPPRTAPKKQLPSIPKNALPITKPTSPAPAAQSTNGTHASY |
Parental | GPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGDCPRL |
GPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFI.HGLYQDGVFKFTVYIPDNYPDGDCPRL | |
Retrocopy | GPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIQHGLYQDGVFKFTVYIPDNYPDGDCPRL |
Parental | VFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMYARRVFYKIDTASPLNPEAAVLYEKDIQLFK |
VFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIW.VLMYARRVFYKIDTASPLNPEAAVLYEKDIQLFK | |
Retrocopy | VFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIW*VLMYARRVFYKIDTASPLNPEAAVLYEKDIQLFK |
Parental | SKVVDSVKVCTARL |
SKVVDSVKVCTARL | |
Retrocopy | SKVVDSVKVCTARL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 16 .02 RPM |
bodymap2_adrenal | 0 .00 RPM | 11 .54 RPM |
bodymap2_brain | 0 .05 RPM | 30 .33 RPM |
bodymap2_breast | 0 .02 RPM | 12 .76 RPM |
bodymap2_colon | 0 .04 RPM | 14 .71 RPM |
bodymap2_heart | 0 .00 RPM | 22 .97 RPM |
bodymap2_kidney | 0 .06 RPM | 15 .49 RPM |
bodymap2_liver | 0 .00 RPM | 5 .72 RPM |
bodymap2_lung | 0 .00 RPM | 8 .47 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .98 RPM |
bodymap2_ovary | 0 .02 RPM | 19 .06 RPM |
bodymap2_prostate | 0 .09 RPM | 15 .90 RPM |
bodymap2_skeletal_muscle | 0 .05 RPM | 12 .84 RPM |
bodymap2_testis | 0 .15 RPM | 30 .88 RPM |
bodymap2_thyroid | 0 .00 RPM | 19 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 11 .54 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
CB126446 | 24170566 | 24170810 | 99.2 | 242 | 2 | 240 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_153361 | 1792 libraries | 32 libraries | 2 libraries | 3 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2282 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |