RetrogeneDB ID: | retro_hsap_3362 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:109175824..109176391(-) | ||
Located in intron of: | ENSG00000112893 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000249068 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CT45A5 | ||
Ensembl ID: | ENSG00000242284 | ||
Aliases: | CT45A5, CT45.5, CT455 | ||
Description: | cancer/testis antigen family 45, member A5 [Source:HGNC Symbol;Acc:33270] |
Percent Identity: | 72.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLD |
MTDK.EKVAV.PE.VFKRPRE...PS.QKRQ.MALL.RKQ.AGDSLI.GSAMSKEKKLM.G..IPPSQLD | |
Retrocopy | MTDKAEKVAVEPENVFKRPRESETPSSQKRQKMALLLRKQRAGDSLIGGSAMSKEKKLMAGDGIPPSQLD |
Parental | SQIDDFTGFSKDGMMQKPGSNAPVGGNVTSNFSGDDLECRGIASSPKSQQEINADIKCQVVKEIRCLGRK |
S..DDF.G.SKDG.MQKPG.NAPVGG..TSNFSGDDL....I...PK.Q.EINADIKCQ.VKEI....RK | |
Retrocopy | SRFDDFSGCSKDGLMQKPGRNAPVGGIITSNFSGDDLKVTEILPFPKCQEEINADIKCQLVKEIQHFRRK |
Parental | YEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI |
YEK.F..LEG.QGP..V.K.FFESIIKEA.R.MRRD...HL.KKL..MI | |
Retrocopy | YEKLFKLLEGLQGPIEVKK*FFESIIKEATRFMRRDLIQHLEKKLEQMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .12 RPM | 0 .00 RPM |
bodymap2_adrenal | 0 .12 RPM | 0 .00 RPM |
bodymap2_brain | 0 .28 RPM | 0 .00 RPM |
bodymap2_breast | 0 .00 RPM | 0 .00 RPM |
bodymap2_colon | 0 .00 RPM | 0 .00 RPM |
bodymap2_heart | 0 .00 RPM | 0 .00 RPM |
bodymap2_kidney | 0 .06 RPM | 0 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .04 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .00 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .00 RPM |
bodymap2_prostate | 0 .05 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 0 .89 RPM |
bodymap2_thyroid | 0 .02 RPM | 0 .00 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2285 |
Pongo abelii | retro_pabe_2766 |
Macaca mulatta | retro_mmul_2100 |
Callithrix jacchus | retro_cjac_1827 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014436 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004135 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008443 | 1 retrocopy | |
Homo sapiens | ENSG00000102786 | 1 retrocopy | |
Homo sapiens | ENSG00000242284 | 1 retrocopy |
retro_hsap_3362 ,
|
Macaca mulatta | ENSMMUG00000021984 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002303 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020755 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000041730 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .12 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .18 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .19 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .14 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .10 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .12 RPM |