RetrogeneDB ID: | retro_ptro_2285 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:110266855..110267422(-) | ||
Located in intron of: | ENSPTRG00000017122 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPTRG00000041730 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGDGIPPSQLD |
MTDK.EKVAV.PE.VFKRPRE..SPS.QKRQ.MALL.RKQ.AGDSLI.GSAMSKEKKLM.GDGIPPSQLD | |
Retrocopy | MTDKAEKVAVEPENVFKRPRESESPSSQKRQKMALLLRKQRAGDSLIGGSAMSKEKKLMAGDGIPPSQLD |
Parental | SQIDDFTGFSKDGMMRKPGSNAPVGGNVTSSFSGDDLECRGIASSPKSQQEINADIKYQVVKEIRYLGRK |
S..DDF.G.SKDG.M.KPG.NAPVGG..TS.FSGDDL........PK.Q.EINADIK.Q.VKEI....RK | |
Retrocopy | SRFDDFSGCSKDGLMQKPGRNAPVGGIITSNFSGDDLKVTEMLPFPKCQEEINADIKCQLVKEIQHFRRK |
Parental | YEKVFKMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI |
YEK.FK.LEG.QGP..V.K.FFESIIKEA.R.MRRD...HL.KKL..MI | |
Retrocopy | YEKLFKLLEGLQGPIEVKK*FFESIIKEATRFMRRDLIQHLEKKLEQMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .21 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .04 RPM | 0 .00 RPM |
SRP007412_heart | 0 .03 RPM | 0 .03 RPM |
SRP007412_kidney | 0 .13 RPM | 0 .00 RPM |
SRP007412_liver | 0 .03 RPM | 0 .00 RPM |
SRP007412_testis | 0 .21 RPM | 0 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3362 |
Pongo abelii | retro_pabe_2766 |
Macaca mulatta | retro_mmul_2100 |
Callithrix jacchus | retro_cjac_1827 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014436 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004135 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008443 | 1 retrocopy | |
Homo sapiens | ENSG00000242284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021984 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002303 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020755 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005890 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000041730 | 1 retrocopy |
retro_ptro_2285 ,
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