RetrogeneDB ID: | retro_mmul_2100 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:106145299..106145865(-) | ||
Located in intron of: | ENSMMUG00000003316 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000021984 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTDKTEKVAVDPETVFKRPREC-DSPSYQKRQKMALLARKQGAGDSLTAGSAMSKEKKHKTGHGVLPSQL |
MTDK.EKVAV.PE.VFK..RE...SPS.QKRQKMALL.RKQ.AGDSL..GS.MSKEKK...G.G..PSQL | |
Retrocopy | MTDKAEKVAVEPENVFKCHRES<ESPSSQKRQKMALLLRKQRAGDSLIGGSTMSKEKKLMAGDGIPPSQL |
Parental | DSQIDDFADFSKDGLMQKPGSNAPVGGIITSNFSGDDLKCREIIPFPKSQEEINADIKCQLVKEIRSIGR |
DS..DDF..FSKDGLMQKPG.NAPV.GIIT.NFSGDDLK..EI.PFPKSQEEIN.DIKCQLVKEIR..GR | |
Retrocopy | DSWFDDFSGFSKDGLMQKPGRNAPVRGIITRNFSGDDLKVTEILPFPKSQEEINVDIKCQLVKEIRHFGR |
Parental | KYEKIFKLLEGVQGPIEVKKLFFESIIKEAARYISRDFVQLLEKKLEHMI |
KYEK.FKLLEG.QGP.EVKK.FFESIIKEA.R...RD..Q.LEKKLE.MI | |
Retrocopy | KYEKLFKLLEGLQGPMEVKK*FFESIIKEATRFMRRDLIQHLEKKLEQMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .13 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .12 RPM | 0 .00 RPM |
SRP007412_liver | 0 .04 RPM | 0 .00 RPM |
SRP007412_testis | 0 .04 RPM | 1 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3362 |
Pan troglodytes | retro_ptro_2285 |
Pongo abelii | retro_pabe_2766 |
Callithrix jacchus | retro_cjac_1827 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014436 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004135 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008443 | 1 retrocopy | |
Homo sapiens | ENSG00000242284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021984 | 1 retrocopy |
retro_mmul_2100 ,
|
Nomascus leucogenys | ENSNLEG00000002303 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020755 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000041730 | 1 retrocopy |