RetrogeneDB ID: | retro_hsap_536 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:243787963..243788320(-) | ||
Located in intron of: | ENSG00000117020 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226766 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP7 | ||
Ensembl ID: | ENSG00000164434 | ||
Aliases: | FABP7, B-FABP, BLBP, FABPB, MRG | ||
Description: | fatty acid binding protein 7, brain [Source:HGNC Symbol;Acc:3562] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 89.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QNFDEYMKALGVGFATRQVGNVTKP-TVIISQEG-DKVVIRTLSTFKNTEISFQLGEEFDETTADDRNCK |
QNFDEYMKALG.GF.TRQVGNV.KP...I...E...KVVIR..S.FKNTE.SF.LGEEFDETT.DDRNCK | |
Retrocopy | QNFDEYMKALGMGFVTRQVGNVDKPRVIISQEED<QKVVIRIQSMFKNTEVSFHLGEEFDETTTDDRNCK |
Parental | SVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF-GDVVAVRHYEKA |
.VVSLD.DKL.HIQKWD.KET.F.REIK.G.MVMT.....DVVAV.HY.KA | |
Retrocopy | FVVSLDRDKLIHIQKWDDKETYFIREIKYGEMVMTYFW>DDVVAVHHYKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .18 RPM | 0 .06 RPM |
bodymap2_adrenal | 0 .20 RPM | 0 .00 RPM |
bodymap2_brain | 0 .56 RPM | 59 .40 RPM |
bodymap2_breast | 0 .14 RPM | 5 .97 RPM |
bodymap2_colon | 0 .00 RPM | 0 .12 RPM |
bodymap2_heart | 0 .07 RPM | 0 .06 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .51 RPM |
bodymap2_ovary | 0 .02 RPM | 0 .00 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .45 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .56 RPM |
bodymap2_testis | 0 .00 RPM | 0 .15 RPM |
bodymap2_thyroid | 0 .04 RPM | 1 .86 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_402 |
Gorilla gorilla | retro_ggor_489 |
Pongo abelii | retro_pabe_213 |
Macaca mulatta | retro_mmul_458 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014056 | 1 retrocopy | |
Homo sapiens | ENSG00000121769 | 1 retrocopy | |
Homo sapiens | ENSG00000164434 | 1 retrocopy |
retro_hsap_536 ,
|
Homo sapiens | ENSG00000164687 | 12 retrocopies | |
Homo sapiens | ENSG00000197416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025475 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021907 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001497 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031110 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000992 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016979 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018564 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003313 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .09 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |