RetrogeneDB ID: | retro_hsap_916 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:93342941..93343561(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255515 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | N6AMT1 | ||
Ensembl ID: | ENSG00000156239 | ||
Aliases: | None | ||
Description: | N-6 adenine-specific DNA methyltransferase 1 (putative) [Source:HGNC Symbol;Acc:16021] |
Percent Identity: | 85.1 % |
Parental protein coverage: | 96.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLNALEAAAAELAGVEICLEVGSGSGVVSAFLASMIGPQ |
MA...F.TP..GHVG.G.FSDVYEP.EDTFLLL..L..AAAELAGVEICLE.G.GSGVVSAFLAS.IGPQ | |
Retrocopy | MAAQSFPTPLQGHVG*GMFSDVYEPVEDTFLLLDVLQVAAAELAGVEICLEIGAGSGVVSAFLASVIGPQ |
Parental | ALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTE-KVDLLVFNPPYVVTPPQEVGSHGIE |
ALYMCTDINPEAAACTL.TARCNKVHIQPVITD.VK.LLP.L.E.KVDLLVFNP.YVVTPP.EVGSHGIE | |
Retrocopy | ALYMCTDINPEAAACTLKTARCNKVHIQPVITDVVKCLLPILKE<KVDLLVFNPLYVVTPPEEVGSHGIE |
Parental | AAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTTALSRQAGQETLS |
AAWA.G.NG.EVM.RFFPLVPDLLSPKGLFYLVTIKENNPE.I.KIMKTKGLQGTTALSRQAGQET.S | |
Retrocopy | AAWAAGRNGQEVMHRFFPLVPDLLSPKGLFYLVTIKENNPEDIWKIMKTKGLQGTTALSRQAGQETFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 5 .33 RPM |
bodymap2_adrenal | 0 .00 RPM | 4 .67 RPM |
bodymap2_brain | 0 .00 RPM | 6 .26 RPM |
bodymap2_breast | 0 .00 RPM | 9 .18 RPM |
bodymap2_colon | 0 .00 RPM | 10 .63 RPM |
bodymap2_heart | 0 .00 RPM | 10 .58 RPM |
bodymap2_kidney | 0 .04 RPM | 16 .46 RPM |
bodymap2_liver | 0 .00 RPM | 3 .87 RPM |
bodymap2_lung | 0 .00 RPM | 3 .90 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .00 RPM |
bodymap2_ovary | 0 .00 RPM | 18 .54 RPM |
bodymap2_prostate | 0 .00 RPM | 15 .22 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 3 .64 RPM |
bodymap2_testis | 0 .00 RPM | 13 .69 RPM |
bodymap2_thyroid | 0 .00 RPM | 9 .45 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 5 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_635 |
Gorilla gorilla | retro_ggor_739 |
Pongo abelii | retro_pabe_790 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005227 | 1 retrocopy | |
Homo sapiens | ENSG00000156239 | 1 retrocopy |
retro_hsap_916 ,
|
Gorilla gorilla | ENSGGOG00000022382 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002845 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001084 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001551 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011314 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013817 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012777 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000026046 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021743 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001269 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |