RetrogeneDB ID: | retro_sscr_130 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:195103854..195104157(+) | ||
Located in intron of: | ENSSSCG00000027765 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000026046 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.31 % |
Parental protein coverage: | 92.66 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SFPTPEYGHVGRGVFSDVYEPAEDTFLLLDALEAAAAEFSGVEICLEVGSGSGVVSAFLASVIGPQALYM |
SFP.P...H.G...F..V....ED.FLLL..L...AAE...VEICLEVGSGS.VVSA..A..IGPQALYM | |
Retrocopy | SFPRPAHRHMG*STFNEV*DLSEDRFLLLAVLQGVAAELTRVEICLEVGSGSEVVSAL*ACMIGPQALYM |
Parental | CTDVNPEAAACTLETARCNKVHIQPIITDLV |
CTDVNPEAAA.TLE.A.CNKVHIQPIITDLV | |
Retrocopy | CTDVNPEAAAYTLENACCNKVHIQPIITDLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .33 RPM |
SRP014902_testis | 0 .00 RPM | 4 .95 RPM |
SRP018288_heart | 0 .00 RPM | 1 .28 RPM |
SRP018288_kidney | 0 .00 RPM | 1 .87 RPM |
SRP018288_liver | 0 .16 RPM | 1 .12 RPM |
SRP018288_lung | 0 .10 RPM | 2 .34 RPM |
SRP018856_adipose | 0 .00 RPM | 5 .71 RPM |
SRP035408_brain | 0 .00 RPM | 0 .32 RPM |
SRP035408_liver | 0 .00 RPM | 0 .68 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005227 | 1 retrocopy | |
Homo sapiens | ENSG00000156239 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022382 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002845 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001084 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001551 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011314 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013817 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012777 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000026046 | 1 retrocopy |
retro_sscr_130 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000021743 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001269 | 1 retrocopy |