>retro_hvul_102
CGCAATGAACTTCCTGGTGGATTTTATGGTTTGAAGATCGGTGAGCAGAATGGTGGAGAGCAAGCACATGAAGGGGGTTA
CCAGGTGGACAAGTGCCCGTATTCTGGCCTTGAAAATGTTGTATTTGTTCGAGGTTCAGGACCGCATGCTCTGCATTACG
ATGGGCTACCTGGTCACTCTATGAAGGAGATAATTGTAAGTCGAAAATGTGCACAGTCAGTTCTTCGAGGAGCAAAGGTG
TATGTACCTGGTGTTTTAGCTTGCAGTGCACATGTTGAAACGGTGATAAGATTGCAGTGTCAGTGGCTATTGAGCAACCT
GTTAAGGACGGTGGTTGGGCTGTTGGTAAAACACGAGGAATCGTTCTACAGGGGTCGCAGTCAGATGAACATTATGAAGA
GAGAAAGGGTTTGTACATTGGTCAAGGGTTAGCTGCAATGTCAAGGTCAGGAATATTTCGTGTTCTCCATCGAGTTGCAG
TACAGATGGCTGAGAGG
ORF - retro_hvul_102 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.82 % |
Parental protein coverage: |
63.12 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | QNELPGGFNGLKIGEQNGGEQAHEGSYQVDKCPYSGLENVLFVRGSGPHALHYDGQPGHSMKEIIVSRKC |
| .NELPGGF.GLKIGEQNGGEQAHEG.YQVDKCPYSGLENV.FVRGSGPHALHYDG.PGHSMKEIIVSRKC |
Retrocopy | RNELPGGFYGLKIGEQNGGEQAHEGGYQVDKCPYSGLENVVFVRGSGPHALHYDGLPGHSMKEIIVSRKC |
|
Parental | AESVLRGAQVYVPGVLACSAHVE-KGDKIAVSVAIEQPVKDSGWAVGITRGIVLQGSQSDAHYEERKGLY |
| A.SVLRGA.VYVPGVLACSAHVE..GDKIAVSVAIEQPVKD.GWAVG.TRGIVLQGSQSD.HYEERKGLY |
Retrocopy | AQSVLRGAKVYVPGVLACSAHVE<NGDKIAVSVAIEQPVKDGGWAVGKTRGIVLQGSQSDEHYEERKGLY |
|
Parental | IGQGIAAMSRTGIFRVLHGVAVEMTER |
| IGQG.AAMSR.GIFRVLH.VAV.M.ER |
Retrocopy | IGQGLAAMSRSGIFRVLHRVAVQMAER |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_102 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
5 retrocopies.