>retro_hvul_43
CGCAATGAACTTCCTGGTGGATTTAATGGTTTGAAGATCGGTGAGCAGAATGGTGGAGAGCAAGCACATGAAGGGAGTTA
CCAGGTGGACAAGTGCCCGTATTCTGGCCTTGAAAATGTTGTATTTGTTTGAGGTTCAGGACCGCATGCTGTGCATTACG
ATGGGCAACCTGGTCACTCTATGAAGGAGATATTTGTAAGTCGAAGATGTGTAGAGTCAGTTCTTCGAGGAGCAAAGGTG
TATGTACCTGGTGTTTTAGCTTGCAGTGCACATGTTGAAAGGGTGATAAGATTGCAGTGTCAGTTGCTATTGAGCAACCT
GTTAAGGACAGTGGTTGGGTTGTTGGTAAAACACGAGGAATCGTTCTACAGGGGTCGCAGTCAGTTGCACATTATGAAGA
GAGAAAGGGTTTGTACATTGATCAAGGGTTTGTTGCAATGTCAAGGACAAGAATATTTCGTGTTCTTCATGGAGTTGCAG
TAGAGATGACTAAGAGG
ORF - retro_hvul_43 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.23 % |
Parental protein coverage: |
63.12 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | QNELPGGFNGLKIGEQNGGEQAHEGSYQVDKCPYSGLENVLFVRGSGPHALHYDGQPGHSMKEIIVSRKC |
| .NELPGGFNGLKIGEQNGGEQAHEGSYQVDKCPYSGLENV.FV.GSGPHA.HYDGQPGHSMKEI.VSR.C |
Retrocopy | RNELPGGFNGLKIGEQNGGEQAHEGSYQVDKCPYSGLENVVFV*GSGPHAVHYDGQPGHSMKEIFVSRRC |
|
Parental | AESVLRGAQVYVPGVLACSAHVE-KGDKIAVSVAIEQPVKDSGWAVGITRGIVLQGSQSDAHYEERKGLY |
| .ESVLRGA.VYVPGVLACSAHVE.KGDKIAVSVAIEQPVKDSGW.VG.TRGIVLQGSQS.AHYEER.... |
Retrocopy | VESVLRGAKVYVPGVLACSAHVE<KGDKIAVSVAIEQPVKDSGWVVGKTRGIVLQGSQSVAHYEERXXXX |
|
Parental | IGQGIAAMSRTGIFRVLHGVAVEMTER |
| ..........T.IFRVLHGVAVEMT.R |
Retrocopy | XXXXXXXXXXTRIFRVLHGVAVEMTKR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_43 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
5 retrocopies.