RetrogeneDB ID: | retro_hvul_23 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 3:500030528..500031545(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | MLOC_25678 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_73076 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.12 % |
Parental protein coverage: | 93.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FTEKDLASEESLRGLYERWRSHYTVSRRGLGADAEERRFNVFKQNARYVHEGNKRDMPFRLALNKFADMT |
F...DLASE.SL..LYERWR...TV.R..LG..A..RRFNVF..N.R..HE.N..D.P..L.LN.F.DMT | |
Retrocopy | FGDHDLASEDSLWALYERWREQHTVAR-DLGEKA--RRFNVFRENVRLIHEFNRGDAPYKLRLNRFGDMT |
Parental | TDEFRRTYAGSRVRHHLSLSGGRRGDGGFRYGDADNL---PPAVDWRQKGAVTAIKDQGQCGSCWAFSTI |
.DEFRR.YA.SRV.HH...S....G.GGF..G.A......PP.VDWRQKGAVTA.KDQGQCGSCWAFSTI | |
Retrocopy | ADEFRRAYASSRVSHHRMFSL-KEGGGGFMHGSAASVRDVPPSVDWRQKGAVTAVKDQGQCGSCWAFSTI |
Parental | VAVEGINKIRTGKLVSLSEQELMDCDNVNNQGCDGGLMDYAFQFIQKN-GITTESNYPYQGEQGSCDQAK |
.AVEGIN.IR...L.SLSEQ.L.DCD...N.GC.GGLMDYAFQ.I.K..G...E..YPY...Q.S....K | |
Retrocopy | AAVEGINAIRSKNLTSLSEQQLVDCDTKSNAGCNGGLMDYAFQYIAKHGGVAAEDAYPYKARQASSCNKK |
Parental | ENALAVTIDGYEDVPANDESALQKAVAGQPVSVAIDASGQDFQFYSEGVFTGECSTDLDHGVAAVGYGAT |
..A..VTIDGYEDVPANDE.AL.KAVA.QPV.VAI.ASG..FQFYSEGVF.G.C.T.LDHGVAAVGYG.T | |
Retrocopy | PSAV-VTIDGYEDVPANDETALKKAVAAQPVAVAIEASGSHFQFYSEGVFAGKCGTELDHGVAAVGYGTT |
Parental | RDGTKYWIVKNSWGEDWGEKGYIRMQRGVSQTEGLCGIAMQASYPTKSAPHASTVREGSHTDEL |
.DGTKYWIVKNSWG..WGEKGYIRM.R.V...EGLCGIAM.ASYP.K....A.....G.H.DEL | |
Retrocopy | VDGTKYWIVKNSWGPEWGEKGYIRMKRDVKDKEGLCGIAMEASYPVKTS--ANPKHAGAH-DEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI4G19707 | 2 retrocopies | |
Zea mays | GRMZM2G099765 | 1 retrocopy | |
Hordeum vulgare | MLOC_73076 | 2 retrocopies |
retro_hvul_23 , retro_hvul_68,
|
Hordeum vulgare | MLOC_81876 | 2 retrocopies | |
Oryza barthii | OBART11G08490 | 1 retrocopy | |
Oryza glumaepatula | OGLUM05G09560 | 1 retrocopy | |
Oryza meridionalis | OMERI11G07520 | 1 retrocopy | |
Setaria italica | Si026545m.g | 1 retrocopy |