RetrogeneDB ID: | retro_itri_1188 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393396.1:2475071..2475785(+) | ||
Located in intron of: | ENSSTOG00000011936 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM22 | ||
Ensembl ID: | ENSSTOG00000027197 | ||
Aliases: | None | ||
Description: | RNA binding motif protein 22 [Source:HGNC Symbol;Acc:25503] |
Percent Identity: | 86.61 % |
Parental protein coverage: | 58.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | WRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRN |
.RHEKPTDPDDPLADQNIKDRYYGI.DPVADKLL..AS.MPRLDPPEDKTITTL.VGG.GDTITETDL.N | |
Retrocopy | YRHEKPTDPDDPLADQNIKDRYYGISDPVADKLLTQASIMPRLDPPEDKTITTLDVGGPGDTITETDLIN |
Parental | HFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTD |
HFYQFGEIR.ITVVQRQQCA.IQFATRQAAEVAAEKSFNKLIV.G.RL.VKWGRS.AARG.EKEKDGT.D | |
Retrocopy | HFYQFGEIRRITVVQRQQCALIQFATRQAAEVAAEKSFNKLIVSGCRLKVKWGRSPAARGEEKEKDGTKD |
Parental | SGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPP |
SG..LEPVPGLPGALPPPPAA.EEASA.YFNL.PSGPPAVVN.ALPP.PG.AP.PPPG.GPHM.HPM.PP | |
Retrocopy | SGTQLEPVPGLPGALPPPPAA-EEASASYFNLLPSGPPAVVNTALPPLPGTAPSPPPGLGPHMVHPMRPP |
Parental | PPFMRAPGPIHYPSQDPQRMGAHAGKHSS |
.PFMRAPGPIH.PSQDPQRMGAHAG..SS | |
Retrocopy | APFMRAPGPIHSPSQDPQRMGAHAGRYSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000009040 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000009574 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010397 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027197 | 1 retrocopy |
retro_itri_1188 ,
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