RetrogeneDB ID: retro_mluc_1453

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429841:360723..361983(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009040
• Aliases: None
• Description: None

Sequence

>retro_mluc_1453
ATGGCGACTTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATCCTGTGCCAGACTTG
TCTTGGAGAAAACCCATATATCTGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAAACCTGTAGTAAATTGAAGAATGTC
TGTCAGACTTGCCTCTTGGATCTGGAGTATGGCCTGCCCATCCAGGTTCGTGATGCAGGGCTGTTTTTTAAGGATGACAT
GCCCAAATCAGATGTCAACAAAGAGTACTACACACAGAATATGGAGAGGGAGATTTCTAACTCTGATGGAATACGGCCAG
TTGGCATGCTGGGGAAAGCCACATCCACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAAT
CGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAATGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTAC
AGATCCAGATGACCCCCTTGCTGATCAGAACATTAAAGACCGATATTATGGAATCAATGACCCTGTGGCAGATAAGCTTC
TAAAGCGGGCTTCAACAATGCCTCGTTTGGACCCGCCAGAGGACAAGACTATCACCACACTATATGTTGGTGGTCTGGGC
GATACCATTACTGAGACAGACCTAAGAAATCATTTCTACCAGTTTGGAGAGATTCGGACGATCACAGTGGTGCAGAGACA
GCAATGTGCTTTCATCCAGTTTGCCACAAGGCAGGCTGCTGAAGTGGCTGCAGAGAAGTCCTTTAATAAGCTAATTGTCA
ATGGCCGTCGACTTAATGTGAAATGGGGAAGGTCCCAAGCAGCCCGAGGAAAAGAAAAAGAGAGAGACGGAACCACAGAC
TCTGGCATCAAGCTGGAGCCTGTTCCAGGCCTGCCAGGAGCTCTTCCCCCTCCTCCTGCAGCAGAGGAAGAAGCCTCTGC
CAACTACTTCAACCTGCCCCCCAGTGGCCCTCCAGCTGTGGTGAACATCGCCCTGCCGCCACCCCCTGGGATTGCCCCAC
CCCCACCCCCAGGTTTTGGGCCACATATGTTCCACCCAATGGGACCTCCTCCTCCTTTCATGAGGGCTCCAGGACCAATC
CACTATCCTTCTCAGGACCCTCAGAGAATGGGAGCTCATGCTGGGAAACACAGCAGCCCC

Alignment

ORF - retro_mluc_1453 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.71 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV
          MATSLGSNTYNRQNWEDADFPILCQTCLGENPYI.MTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV
Retrocopy MATSLGSNTYNRQNWEDADFPILCQTCLGENPYI*MTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV

Parental  CQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKA
          CQTCSKLKNVCQTCLLDLEYGLPIQVRDAGL.FKDDMPKSDVNKEYYTQNMEREISNSDG.RPVGMLGKA
Retrocopy CQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLFFKDDMPKSDVNKEYYTQNMEREISNSDGIRPVGMLGKA

Parental  TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA
          TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA
Retrocopy TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA

Parental  DKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA
          DKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA
Retrocopy DKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA

Parental  EVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYF
          EVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKE.DGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYF
Retrocopy EVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKERDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYF

Parental  NLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP
          NLPPSGPPAVVNI..............GFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP
Retrocopy NLPPSGPPAVVNIXXXXXXXXXXXXXXGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1453 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 34 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018082	1 retrocopy	retro_cfam_1480,
Callithrix jacchus	ENSCJAG00000020963	6 retrocopies	retro_cjac_1338, retro_cjac_2471, retro_cjac_3342, retro_cjac_3390, retro_cjac_3934, retro_cjac_990,
Cavia porcellus	ENSCPOG00000001946	2 retrocopies	retro_cpor_280, retro_cpor_283,
Dasypus novemcinctus	ENSDNOG00000011166	1 retrocopy	retro_dnov_2298,
Homo sapiens	ENSG00000086589	2 retrocopies	retro_hsap_3465, retro_hsap_4273,
Gorilla gorilla	ENSGGOG00000012947	2 retrocopies	retro_ggor_2337, retro_ggor_2859,
Myotis lucifugus	ENSMLUG00000009040	2 retrocopies	retro_mluc_1453 , retro_mluc_153,
Macaca mulatta	ENSMMUG00000020683	4 retrocopies	retro_mmul_1199, retro_mmul_1348, retro_mmul_1553, retro_mmul_1762,
Monodelphis domestica	ENSMODG00000009574	1 retrocopy	retro_mdom_186,
Nomascus leucogenys	ENSNLEG00000010397	2 retrocopies	retro_nleu_1691, retro_nleu_1800,
Otolemur garnettii	ENSOGAG00000011086	1 retrocopy	retro_ogar_2206,
Pongo abelii	ENSPPYG00000015955	4 retrocopies	retro_pabe_1412, retro_pabe_1594, retro_pabe_2861, retro_pabe_3486,
Pan troglodytes	ENSPTRG00000017423	2 retrocopies	retro_ptro_2348, retro_ptro_2898,
Ictidomys tridecemlineatus	ENSSTOG00000027197	1 retrocopy	retro_itri_1188,
Tarsius syrichta	ENSTSYG00000003939	3 retrocopies	retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231,