RetrogeneDB ID: retro_mluc_153

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:167169..168426(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003461
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009040
• Aliases: None
• Description: None

Sequence

>retro_mluc_153
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCAGACTTCCCCATCCTGTGCCAGACGTG
TCTTGGAGAAAACCCGTATATCCGAATGACCAAAGAAAAGTACGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGCCCCGGAGTCCGCATGCGTTTCAAGAAGACTGAGGTGTGCCAAACCTGTAGTAAATTGAAGAATGTC
TGTCAGACTTGCCTCTTGGATCTGGAGTATGGCCTGCCCATCCAGGTTCGTGATACAGGGCTGTCTTTTAAGGATGACAT
GCCAAAATCAGATGTCAACAAAGAGTACTACACACAGAATATGGAGAGGGAGATTTCTAACTCTGATGGAACACGGCCAG
TTGGCATGCTGGGGAAAGCCACATCCACCAGCGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAAT
CGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAATGTAAGAGAGGAGATGAATGTCCATACAGACATGAGAAGCCTAC
AGATCCAGATGACCCCCTTGCTGATCAGAACATTAAAGACCGCTATTATGGAATCAATGACCCTGTGGCAGATAAGCTTC
TAAGGCGGGCTTCAACAATGCCTCGTTTGGACCCGCCAGAGGACAAGACTATCACCACACTATATGTTGGTGGTCTGGGC
AATACCATTACTGAGACAGACCTAAGAAATCATTTCTACCAGTTTGGAGAGATTCGGACGATCACCGTGGTGCAGAGACA
GCAATGTGCTTTCATCCAGTTTGCCACAAGGCAGGCTGCTGAAGTGGCTGCGGAGAAGTCCTTTAATAAGCTAATTGTCA
ATGGCCGTCGACTTCATGTGAAATGGGGAAGGTCCCAAGCAGCCCCAGGAAAAGAAAAAGAGAACAACGGAACCACAGAC
TCTCGCATCAATCTGGAGCCTGTTCCAGGCCTGCCAGGAGCTCTTCCCCCTCCTCCTGCAGCAGAGGAAGAAGCCTCTGC
CAACTACTTCAACCTGCCCCCCAGTGGCCCTCCAGCTGTGGTGAACATCGCCCTGCCGCCACCCCCTGGAATTGCCCCAC
CCCCAGGTTTTGGGCCACCTATGTTCCACCCAATGGGACCACCTCCTCCTTTCATGAGGGCTCCAGGACCAATCCACTAT
CCTTCTCAGGTCCCTCAGAGAATGGGAGCTCATGCTGGGAAACACAGCAGCCCCTAG

Alignment

ORF - retro_mluc_153 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.67 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV
          MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV
Retrocopy MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV

Parental  CQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKA
          CQTCSKLKNVCQTCLLDLEYGLPIQVRD.GLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKA
Retrocopy CQTCSKLKNVCQTCLLDLEYGLPIQVRDTGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKA

Parental  TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA
          TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRG.ECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA
Retrocopy TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGDECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA

Parental  DKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA
          DKLL.RASTMPRLDPPEDKTITTLYVGGLG.TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA
Retrocopy DKLLRRASTMPRLDPPEDKTITTLYVGGLGNTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA

Parental  EVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYF
          EVAAEKSFNKLIVNGRRL.VKWGRSQAA.GKEKE..GTTDS.I.LEPVPGLPGALPPPPAAEEEASANYF
Retrocopy EVAAEKSFNKLIVNGRRLHVKWGRSQAAPGKEKENNGTTDSRINLEPVPGLPGALPPPPAAEEEASANYF

Parental  NLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP
          NLPPSGPPAVVNIALPPPPGIA..PPPGFGP.MFHPMGPPPPFMRAPGPIHYPSQ.PQRMGAHAGKHSSP
Retrocopy NLPPSGPPAVVNIALPPPPGIA--PPPGFGPPMFHPMGPPPPFMRAPGPIHYPSQVPQRMGAHAGKHSSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_153 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 34 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018082	1 retrocopy	retro_cfam_1480,
Callithrix jacchus	ENSCJAG00000020963	6 retrocopies	retro_cjac_1338, retro_cjac_2471, retro_cjac_3342, retro_cjac_3390, retro_cjac_3934, retro_cjac_990,
Cavia porcellus	ENSCPOG00000001946	2 retrocopies	retro_cpor_280, retro_cpor_283,
Dasypus novemcinctus	ENSDNOG00000011166	1 retrocopy	retro_dnov_2298,
Homo sapiens	ENSG00000086589	2 retrocopies	retro_hsap_3465, retro_hsap_4273,
Gorilla gorilla	ENSGGOG00000012947	2 retrocopies	retro_ggor_2337, retro_ggor_2859,
Myotis lucifugus	ENSMLUG00000009040	2 retrocopies	retro_mluc_1453, retro_mluc_153 ,
Macaca mulatta	ENSMMUG00000020683	4 retrocopies	retro_mmul_1199, retro_mmul_1348, retro_mmul_1553, retro_mmul_1762,
Monodelphis domestica	ENSMODG00000009574	1 retrocopy	retro_mdom_186,
Nomascus leucogenys	ENSNLEG00000010397	2 retrocopies	retro_nleu_1691, retro_nleu_1800,
Otolemur garnettii	ENSOGAG00000011086	1 retrocopy	retro_ogar_2206,
Pongo abelii	ENSPPYG00000015955	4 retrocopies	retro_pabe_1412, retro_pabe_1594, retro_pabe_2861, retro_pabe_3486,
Pan troglodytes	ENSPTRG00000017423	2 retrocopies	retro_ptro_2348, retro_ptro_2898,
Ictidomys tridecemlineatus	ENSSTOG00000027197	1 retrocopy	retro_itri_1188,
Tarsius syrichta	ENSTSYG00000003939	3 retrocopies	retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231,